GCF_004366815.1_ASM436681v1_genomic - 9 region(s)

Identified primary metabolite regions

NZ_SORI01000001 (original name was: NZ_SORI01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	porA	SCFA	132,381	157,134
Region 1.2	OD_fatty_acids	Putative	197,572	220,424

NZ_SORI01000003 (original name was: NZ_SORI01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Glycine_cleavage	Other	12,831	37,208	Glycine cleavage C. sticklandii	GLY	80%
Region 3.2	TPP_AA_metabolism	Putative	149,628	172,860
Region 3.3	porA	SCFA	209,492	232,118	porA C. sporogenes	POR	60%

NZ_SORI01000004 (original name was: NZ_SORI01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	OD_fatty_acids	Putative	12,435	48,755	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_SORI01000008 (original name was: NZ_SORI01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	porA	SCFA	84,461	107,108	porA C. sporogenes	POR	60%

NZ_SORI01000010 (original name was: NZ_SORI01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	OD_aldehydes_related	Putative	36,130	64,251

NZ_SORI01000011 (original name was: NZ_SORI01000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Putrescine2spermidine	Aliphatic_amine	1	17,096

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	porA	SCFA	132,381	157,134
Region 1.2	OD_fatty_acids	Putative	197,572	220,424
Region 3.1	Glycine_cleavage	Other	12,831	37,208	Glycine cleavage C. sticklandii	GLY	80%
Region 3.2	TPP_AA_metabolism	Putative	149,628	172,860
Region 3.3	porA	SCFA	209,492	232,118	porA C. sporogenes	POR	60%
Region 4.1	OD_fatty_acids	Putative	12,435	48,755	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 8.1	porA	SCFA	84,461	107,108	porA C. sporogenes	POR	60%
Region 10.1	OD_aldehydes_related	Putative	36,130	64,251
Region 11.1	Putrescine2spermidine	Aliphatic_amine	1	17,096

No primary metabolite regions were found in these records:: NZ_SORI01000002 (original name was: NZ_SORI01000002.1); NZ_SORI01000005 (original name was: NZ_SORI01000005.1); NZ_SORI01000006 (original name was: NZ_SORI01000006.1); NZ_SORI01000007 (original name was: NZ_SORI01000007.1); NZ_SORI01000009 (original name was: NZ_SORI01000009.1); NZ_SORI01000012 (original name was: NZ_SORI01000012.1); NZ_SORI01000013 (original name was: NZ_SORI01000013.1); NZ_SORI01000014 (original name was: NZ_SORI01000014.1); NZ_SORI01000015 (original name was: NZ_SORI01000015.1); NZ_SORI01000016 (original name was: NZ_SORI01000016.1); NZ_SORI01000017 (original name was: NZ_SORI01000017.1); NZ_SORI01000018 (original name was: NZ_SORI01000018.1); NZ_SORI01000019 (original name was: NZ_SORI01000019.1); NZ_SORI01000020 (original name was: NZ_SORI01000020.1); NZ_SORI01000021 (original name was: NZ_SORI01000021.1); NZ_SORI01000022 (original name was: NZ_SORI01000022.1); NZ_SORI01000023 (original name was: NZ_SORI01000023.1); NZ_SORI01000024 (original name was: NZ_SORI01000024.1); NZ_SORI01000025 (original name was: NZ_SORI01000025.1); NZ_SORI01000026 (original name was: NZ_SORI01000026.1); NZ_SORI01000027 (original name was: NZ_SORI01000027.1); NZ_SORI01000028 (original name was: NZ_SORI01000028.1); NZ_SORI01000029 (original name was: NZ_SORI01000029.1); NZ_SORI01000030 (original name was: NZ_SORI01000030.1); NZ_SORI01000031 (original name was: NZ_SORI01000031.1); NZ_SORI01000032 (original name was: NZ_SORI01000032.1); NZ_SORI01000033 (original name was: NZ_SORI01000033.1); NZ_SORI01000034 (original name was: NZ_SORI01000034.1); NZ_SORI01000035 (original name was: NZ_SORI01000035.1); NZ_SORI01000036 (original name was: NZ_SORI01000036.1); NZ_SORI01000037 (original name was: NZ_SORI01000037.1); NZ_SORI01000038 (original name was: NZ_SORI01000038.1); NZ_SORI01000039 (original name was: NZ_SORI01000039.1); NZ_SORI01000040 (original name was: NZ_SORI01000040.1); NZ_SORI01000041 (original name was: NZ_SORI01000041.1); NZ_SORI01000042 (original name was: NZ_SORI01000042.1); NZ_SORI01000043 (original name was: NZ_SORI01000043.1); NZ_SORI01000044 (original name was: NZ_SORI01000044.1); NZ_SORI01000045 (original name was: NZ_SORI01000045.1); NZ_SORI01000046 (original name was: NZ_SORI01000046.1); NZ_SORI01000047 (original name was: NZ_SORI01000047.1); NZ_SORI01000048 (original name was: NZ_SORI01000048.1); NZ_SORI01000049 (original name was: NZ_SORI01000049.1); NZ_SORI01000050 (original name was: NZ_SORI01000050.1); NZ_SORI01000051 (original name was: NZ_SORI01000051.1); NZ_SORI01000052 (original name was: NZ_SORI01000052.1); NZ_SORI01000053 (original name was: NZ_SORI01000053.1); NZ_SORI01000054 (original name was: NZ_SORI01000054.1); NZ_SORI01000055 (original name was: NZ_SORI01000055.1); NZ_SORI01000056 (original name was: NZ_SORI01000056.1); NZ_SORI01000057 (original name was: NZ_SORI01000057.1); NZ_SORI01000058 (original name was: NZ_SORI01000058.1); NZ_SORI01000059 (original name was: NZ_SORI01000059.1); NZ_SORI01000060 (original name was: NZ_SORI01000060.1); NZ_SORI01000061 (original name was: NZ_SORI01000061.1); NZ_SORI01000062 (original name was: NZ_SORI01000062.1)

Compact view

c00001_NZ_SORI.. - Region 1 - porA

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Location: 132,381 - 157,134 nt. (total: 24,754 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00001_NZ_SORI.. - Region 2 - OD_fatty_acids

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Location: 197,572 - 220,424 nt. (total: 22,853 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00003_NZ_SORI.. - Region 1 - Glycine_cleavage

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Location: 12,831 - 37,208 nt. (total: 24,378 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00003_NZ_SORI.. - Region 2 - TPP_AA_metabolism

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Location: 149,628 - 172,860 nt. (total: 23,233 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00003_NZ_SORI.. - Region 3 - porA

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Location: 209,492 - 232,118 nt. (total: 22,627 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00004_NZ_SORI.. - Region 1 - OD_fatty_acids

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Location: 12,435 - 48,755 nt. (total: 36,321 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00008_NZ_SORI.. - Region 1 - porA

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Location: 84,461 - 107,108 nt. (total: 22,648 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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c00010_NZ_SORI.. - Region 1 - OD_aldehydes_related

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Location: 36,130 - 64,251 nt. (total: 28,122 nt) Show pHMM detection rules used

OD_aldehydes_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(1, [AFOR_C, AFOR_N, Aldedh]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

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regulatory genes

resistance genes

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c00011_NZ_SORI.. - Region 1 - Putrescine2spermidine

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Location: 1 - 17,096 nt. (total: 17,096 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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resistance genes

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