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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_UGSE01000002 (original name was: NZ_UGSE01000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 933,103 | 964,208 | O&K-antigen | Saccharide | 3%
Region 1.2 | terpene | 2,326,342 | 2,347,232 | burkholderic acid | NRP + Polyketide:Modular type I | 13%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 933,103 | 964,208 | O&K-antigen | Saccharide | 3%
Region 1.2 | terpene | 2,326,342 | 2,347,232 | burkholderic acid | NRP + Polyketide:Modular type I | 13%

No secondary metabolite regions were found in these records:
  NZ_UGSE01000001 (original name was: NZ_UGSE01000001.1)

Compact view
c00001_NZ_UGSE.. - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 933,103 - 964,208 nt. (total: 31,106 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.22 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0000757.1 |  | 0.21 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0000754.1 |  | 0.21 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0000755.1 |  | 0.21 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum 221
BGC0000756.1 |  | 0.21 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0000734.1 |  | 0.20 | Saccharide | capsular polysaccharide | Pasteurella multocida
BGC0000737.1 |  | 0.20 | Saccharide | capsular polysaccharide | Pasteurella multocida
BGC0000739.1 |  | 0.20 | Saccharide | capsular polysaccharide | Pasteurella multocida
BGC0000766.1 |  | 0.20 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000343.1 |  | 0.18 | NRP | enterobactin | Pseudomonas sp. J465

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000761.1 |  | 0.55 | Saccharide | exopolysaccharide | Methylobacillus sp. 12S
BGC0000757.1 |  | 0.54 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0000754.1 |  | 0.54 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0000755.1 |  | 0.54 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum 221
BGC0000756.1 |  | 0.54 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0000734.1 |  | 0.53 | Saccharide | capsular polysaccharide | Pasteurella multocida
BGC0000737.1 |  | 0.53 | Saccharide | capsular polysaccharide | Pasteurella multocida
BGC0000739.1 |  | 0.53 | Saccharide | capsular polysaccharide | Pasteurella multocida
BGC0000766.1 |  | 0.52 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000343.1 |  | 0.50 | NRP | enterobactin | Pseudomonas sp. J465

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00001_NZ_UGSE.. - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,326,342 - 2,347,232 nt. (total: 20,891 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000513.1 |  | 0.28 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000501.1 |  | 0.21 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000551.1 |  | 0.20 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000519.1 |  | 0.20 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0001077.1 |  | 0.18 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0000496.1 |  | 0.17 | RiPP | AmfS | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001184.1 |  | 0.17 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001779.1 |  | 0.16 | RiPP | siamycin | Streptomyces nodosus
BGC0000487.1 |  | 0.16 | RiPP | carnocyclin | Carnobacterium maltaromaticum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000513.1 |  | 0.61 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000501.1 |  | 0.54 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000551.1 |  | 0.52 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000519.1 |  | 0.52 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0001077.1 |  | 0.49 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0000496.1 |  | 0.49 | RiPP | AmfS | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001184.1 |  | 0.48 | Other | bacilysin | Bacillus velezensis FZB42
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001779.1 |  | 0.47 | RiPP | siamycin | Streptomyces nodosus
BGC0000487.1 |  | 0.47 | RiPP | carnocyclin | Carnobacterium maltaromaticum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names