Select genomic region:
Overview
4.1
19.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CYYM01000004 (original name was: NZ_CYYM01000004.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ranthipeptide | 150,254 | 167,686 |

NZ_CYYM01000019 (original name was: NZ_CYYM01000019.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 19.1 | ranthipeptide | 3,208 | 24,605 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | ranthipeptide | 150,254 | 167,686 |
Region 19.1 | ranthipeptide | 3,208 | 24,605 |

No secondary metabolite regions were found in these records:
  NZ_CYYM01000001 (original name was: NZ_CYYM01000001.1)
  NZ_CYYM01000002 (original name was: NZ_CYYM01000002.1)
  NZ_CYYM01000003 (original name was: NZ_CYYM01000003.1)
  NZ_CYYM01000005 (original name was: NZ_CYYM01000005.1)
  NZ_CYYM01000006 (original name was: NZ_CYYM01000006.1)
  NZ_CYYM01000007 (original name was: NZ_CYYM01000007.1)
  NZ_CYYM01000008 (original name was: NZ_CYYM01000008.1)
  NZ_CYYM01000009 (original name was: NZ_CYYM01000009.1)
  NZ_CYYM01000010 (original name was: NZ_CYYM01000010.1)
  NZ_CYYM01000011 (original name was: NZ_CYYM01000011.1)
  NZ_CYYM01000012 (original name was: NZ_CYYM01000012.1)
  NZ_CYYM01000013 (original name was: NZ_CYYM01000013.1)
  NZ_CYYM01000014 (original name was: NZ_CYYM01000014.1)
  NZ_CYYM01000015 (original name was: NZ_CYYM01000015.1)
  NZ_CYYM01000016 (original name was: NZ_CYYM01000016.1)
  NZ_CYYM01000017 (original name was: NZ_CYYM01000017.1)
  NZ_CYYM01000018 (original name was: NZ_CYYM01000018.1)
  NZ_CYYM01000020 (original name was: NZ_CYYM01000020.1)
  NZ_CYYM01000021 (original name was: NZ_CYYM01000021.1)
  NZ_CYYM01000022 (original name was: NZ_CYYM01000022.1)
  NZ_CYYM01000023 (original name was: NZ_CYYM01000023.1)
  NZ_CYYM01000024 (original name was: NZ_CYYM01000024.1)
  NZ_CYYM01000025 (original name was: NZ_CYYM01000025.1)
  NZ_CYYM01000026 (original name was: NZ_CYYM01000026.1)
  NZ_CYYM01000027 (original name was: NZ_CYYM01000027.1)
  NZ_CYYM01000028 (original name was: NZ_CYYM01000028.1)
  NZ_CYYM01000029 (original name was: NZ_CYYM01000029.1)
  NZ_CYYM01000030 (original name was: NZ_CYYM01000030.1)
  NZ_CYYM01000031 (original name was: NZ_CYYM01000031.1)
  NZ_CYYM01000032 (original name was: NZ_CYYM01000032.1)
  NZ_CYYM01000033 (original name was: NZ_CYYM01000033.1)
  NZ_CYYM01000034 (original name was: NZ_CYYM01000034.1)
  NZ_CYYM01000035 (original name was: NZ_CYYM01000035.1)
  NZ_CYYM01000036 (original name was: NZ_CYYM01000036.1)
  NZ_CYYM01000037 (original name was: NZ_CYYM01000037.1)
  NZ_CYYM01000038 (original name was: NZ_CYYM01000038.1)
  NZ_CYYM01000039 (original name was: NZ_CYYM01000039.1)
  NZ_CYYM01000040 (original name was: NZ_CYYM01000040.1)
  NZ_CYYM01000041 (original name was: NZ_CYYM01000041.1)
  NZ_CYYM01000042 (original name was: NZ_CYYM01000042.1)
  NZ_CYYM01000043 (original name was: NZ_CYYM01000043.1)
  NZ_CYYM01000044 (original name was: NZ_CYYM01000044.1)
  NZ_CYYM01000045 (original name was: NZ_CYYM01000045.1)

Compact view
c00004_NZ_CYYM.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 150,254 - 167,686 nt. (total: 17,433 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001634.1 |  | 0.20 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0001645.1 |  | 0.18 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0001889.1 |  | 0.17 | RiPP | fusilassin | Thermobifida fusca YX
BGC0001356.1 |  | 0.17 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0000601.1 |  | 0.16 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000518.1 |  | 0.16 | RiPP | informatipeptin | Streptomyces viridochromogenes DSM 40736
BGC0000592.1 |  | 0.16 | RiPP | microviridin B | Microcystis aeruginosa NIES-298
BGC0000294.1 |  | 0.15 | NRP | acinetobactin | Acinetobacter baumannii
BGC0001229.1 |  | 0.15 | RiPP | SBI-06990 A1, SBI-06989 A2 | Streptomyces bingchenggensis BCW-1
BGC0000554.1 |  | 0.15 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001634.1 |  | 0.52 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0001645.1 |  | 0.50 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0001889.1 |  | 0.49 | RiPP | fusilassin | Thermobifida fusca YX
BGC0001356.1 |  | 0.49 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0000601.1 |  | 0.47 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000518.1 |  | 0.47 | RiPP | informatipeptin | Streptomyces viridochromogenes DSM 40736
BGC0000592.1 |  | 0.46 | RiPP | microviridin B | Microcystis aeruginosa NIES-298
BGC0000294.1 |  | 0.46 | NRP | acinetobactin | Acinetobacter baumannii
BGC0001229.1 |  | 0.46 | RiPP | SBI-06990 A1, SBI-06989 A2 | Streptomyces bingchenggensis BCW-1
BGC0000554.1 |  | 0.45 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00019_NZ_CYYM.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,208 - 24,605 nt. (total: 21,398 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001387.1 |  | 0.17 | Other | nucleocidin | Streptomyces calvus
BGC0001607.1 |  | 0.15 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0000703.1 |  | 0.14 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000842.1 |  | 0.14 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0000466.1 |  | 0.14 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0001120.1 |  | 0.14 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001887.1 |  | 0.13 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000807.1 |  | 0.12 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000684.1 |  | 0.11 | Terpene | asperthecin | Aspergillus nidulans FGSC A4
BGC0001591.1 |  | 0.10 | Other | fatty acid enol ester | uncultured bacterium CSLC2

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001387.1 |  | 0.48 | Other | nucleocidin | Streptomyces calvus
BGC0001607.1 |  | 0.45 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0000703.1 |  | 0.43 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000842.1 |  | 0.43 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0000466.1 |  | 0.43 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0001120.1 |  | 0.43 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001887.1 |  | 0.41 | RiPP | huazacin | Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000807.1 |  | 0.39 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0000684.1 |  | 0.38 | Terpene | asperthecin | Aspergillus nidulans FGSC A4
BGC0001591.1 |  | 0.36 | Other | fatty acid enol ester | uncultured bacterium CSLC2

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names