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Overview
1.1
7.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LGKN01000003 (original name was: NZ_LGKN01000003.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 1,039,378 | 1,060,343 |

NZ_LGKN01000009 (original name was: NZ_LGKN01000009.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | RRE-containing | 185,913 | 206,188 | vazabitide A | NRP | 4%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 1,039,378 | 1,060,343 |
Region 7.1 | RRE-containing | 185,913 | 206,188 | vazabitide A | NRP | 4%

No secondary metabolite regions were found in these records:
  NZ_LGKN01000002 (original name was: NZ_LGKN01000002.1)
  NZ_LGKN01000008 (original name was: NZ_LGKN01000008.1)
  NZ_LGKN01000012 (original name was: NZ_LGKN01000012.1)
  NZ_LGKN01000004 (original name was: NZ_LGKN01000004.1)
  NZ_LGKN01000005 (original name was: NZ_LGKN01000005.1)
  NZ_LGKN01000006 (original name was: NZ_LGKN01000006.1)
  NZ_LGKN01000007 (original name was: NZ_LGKN01000007.1)
  NZ_LGKN01000001 (original name was: NZ_LGKN01000001.1)
  NZ_LGKN01000011 (original name was: NZ_LGKN01000011.1)
  NZ_LGKN01000010 (original name was: NZ_LGKN01000010.1)

Compact view
c00001_NZ_LGKN.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,039,378 - 1,060,343 nt. (total: 20,966 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.47 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000645.1 |  | 0.23 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000674.1 |  | 0.23 | Terpene | (-)-δ-cadinene | Streptomyces clavuligerus ATCC 27064
BGC0000640.1 |  | 0.23 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.23 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000660.1 |  | 0.23 | Terpene | albaflavenone | Streptomyces coelicolor A3(2)
BGC0000664.1 |  | 0.22 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000656.1 |  | 0.22 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000641.1 |  | 0.21 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.77 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000645.1 |  | 0.56 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000674.1 |  | 0.56 | Terpene | (-)-δ-cadinene | Streptomyces clavuligerus ATCC 27064
BGC0000640.1 |  | 0.56 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.56 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000660.1 |  | 0.56 | Terpene | albaflavenone | Streptomyces coelicolor A3(2)
BGC0000664.1 |  | 0.55 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000656.1 |  | 0.55 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0001227.1 |  | 0.54 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000641.1 |  | 0.53 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00007_NZ_LGKN.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 185,913 - 206,188 nt. (total: 20,276 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001551.1 |  | 0.23 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001458.1 |  | 0.23 | Other (Aminocoumarin) | salinipostin G | Salinispora tropica CNB-440
BGC0001779.1 |  | 0.20 | RiPP | siamycin | Streptomyces nodosus
BGC0000551.1 |  | 0.18 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000784.1 |  | 0.17 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001645.1 |  | 0.17 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0001411.1 |  | 0.17 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0000519.1 |  | 0.17 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000501.1 |  | 0.16 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000558.1 |  | 0.16 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001551.1 |  | 0.57 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001458.1 |  | 0.56 | Other (Aminocoumarin) | salinipostin G | Salinispora tropica CNB-440
BGC0001779.1 |  | 0.52 | RiPP | siamycin | Streptomyces nodosus
BGC0000551.1 |  | 0.50 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000784.1 |  | 0.49 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001645.1 |  | 0.48 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0001411.1 |  | 0.48 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0000519.1 |  | 0.48 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000501.1 |  | 0.47 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000558.1 |  | 0.47 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names