Select genomic region:
Overview
1.1
1.2
1.3
1.4

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP037993.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | siderophore | 2,772,264 | 2,784,123 |
Region 2 | terpene | 3,051,899 | 3,074,797 |
Region 3 | RiPP-like | 3,695,151 | 3,706,002 |
Region 4 | arylpolyene | 4,208,109 | 4,251,753 | APE Vf | Other | 35%

NZ_CP037993.1 - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,772,264 - 2,784,123 nt. (total: 11,860 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 0.18 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1 |  | 0.17 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0002004.1 |  | 0.16 | RiPP | methanobactin | Methylosinus trichosporium OB3b
BGC0000947.1 |  | 0.13 | Other | vibrioferrin | Vibrio alginolyticus
BGC0001999.1 |  | 0.05 | NRP | gramibactin | Paraburkholderia graminis C4D1M
BGC0001189.1 |  | 0.05 | NRP | taiwachelin | Cupriavidus taiwanensis LMG 19424

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000944.1 |  | 0.50 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1 |  | 0.49 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0002004.1 |  | 0.46 | RiPP | methanobactin | Methylosinus trichosporium OB3b
BGC0000947.1 |  | 0.41 | Other | vibrioferrin | Vibrio alginolyticus
BGC0001999.1 |  | 0.24 | NRP | gramibactin | Paraburkholderia graminis C4D1M
BGC0001189.1 |  | 0.21 | NRP | taiwachelin | Cupriavidus taiwanensis LMG 19424

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP037993.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,051,899 - 3,074,797 nt. (total: 22,899 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000656.1 |  | 0.18 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000630.1 |  | 0.16 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0001456.1 |  | 0.16 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000640.1 |  | 0.15 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000633.1 |  | 0.15 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000634.1 |  | 0.15 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000664.1 |  | 0.15 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000643.1 |  | 0.14 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000646.1 |  | 0.14 | Terpene | β-carotein | uncultured bacterium
BGC0001227.1 |  | 0.14 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000656.1 |  | 0.50 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000630.1 |  | 0.47 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0001456.1 |  | 0.46 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000640.1 |  | 0.46 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000633.1 |  | 0.45 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000634.1 |  | 0.44 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000664.1 |  | 0.44 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000643.1 |  | 0.44 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000646.1 |  | 0.44 | Terpene | β-carotein | uncultured bacterium
BGC0001227.1 |  | 0.43 | Terpene | isorenieratene | Streptomyces collinus Tu 365

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP037993.1 - Region 3 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,695,151 - 3,706,002 nt. (total: 10,852 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001486.1 |  | 0.10 | RiPP | 3-thiaglutamate | Pseudomonas syringae pv. maculicola str. ES4326
BGC0002027.1 |  | 0.10 | RiPP | TglA-thiaGlu | Pseudomonas syringae pv. maculicola str. ES4326
BGC0001686.1 |  | 0.08 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567
BGC0001285.1 |  | 0.07 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0001791.1 |  | 0.05 | NRP | sunshinamide | Gynuella sunshinyii YC6258

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001486.1 |  | 0.35 | RiPP | 3-thiaglutamate | Pseudomonas syringae pv. maculicola str. ES4326
BGC0002027.1 |  | 0.35 | RiPP | TglA-thiaGlu | Pseudomonas syringae pv. maculicola str. ES4326
BGC0001686.1 |  | 0.31 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567
BGC0001285.1 |  | 0.29 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0001791.1 |  | 0.22 | NRP | sunshinamide | Gynuella sunshinyii YC6258

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP037993.1 - Region 4 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 4,208,109 - 4,251,753 nt. (total: 43,645 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000837.1 |  | 0.29 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0002008.1 |  | 0.29 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.28 | Other | APE Ec | Escherichia coli CFT073
BGC0001075.1 |  | 0.26 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0001723.1 |  | 0.25 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000231.1 |  | 0.24 | Polyketide | griseusin | Streptomyces griseus
BGC0002029.1 |  | 0.24 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.24 | Other | ferroverdin | Streptomyces lunaelactis
BGC0000889.1 |  | 0.23 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000221.1 |  | 0.23 | Polyketide | erdacin | uncultured soil bacterium V167

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000837.1 |  | 0.63 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0002008.1 |  | 0.62 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.62 | Other | APE Ec | Escherichia coli CFT073
BGC0001075.1 |  | 0.59 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0001723.1 |  | 0.58 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000231.1 |  | 0.58 | Polyketide | griseusin | Streptomyces griseus
BGC0002029.1 |  | 0.57 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.57 | Other | ferroverdin | Streptomyces lunaelactis
BGC0000889.1 |  | 0.57 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000221.1 |  | 0.56 | Polyketide | erdacin | uncultured soil bacterium V167

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names