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Overview
1.1
3.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_DS483503.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 438,197 | 459,862 |

NZ_DS483501.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | cyclic-lactone-autoinducer | 127,440 | 148,027 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 438,197 | 459,862 |
Region 3.1 | cyclic-lactone-autoinducer | 127,440 | 148,027 |

No secondary metabolite regions were found in these records:
  NZ_DS483502.1
  NZ_DS483500.1
  NZ_DS483499.1
  NZ_DS483498.1
  NZ_DS483497.1
  NZ_DS483496.1
  NZ_DS483495.1
  NZ_DS483494.1
  NZ_DS483493.1
  NZ_DS483492.1
  NZ_DS483491.1
  NZ_DS483490.1
  NZ_DS483489.1
  NZ_DS483488.1
  NZ_DS483487.1
  NZ_DS483486.1
  NZ_DS483485.1
  NZ_DS483484.1
  NZ_DS483483.1
  NZ_DS483482.1
  NZ_DS483481.1
  NZ_DS483480.1
  NZ_DS483479.1

Compact view
NZ_DS483503.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 438,197 - 459,862 nt. (total: 21,666 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.17 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.17 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000599.1 |  | 0.13 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001937.1 |  | 0.11 | Other | tubercidin | Streptomyces tubercidicus
BGC0001677.1 |  | 0.11 | Polyketide | mycophenolic acid | Penicillium roqueforti
BGC0000879.1 |  | 0.10 | Other | toyocamycin, sangivamycin | Streptomyces rimosus
BGC0000807.1 |  | 0.10 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0001360.1 |  | 0.09 | Polyketide | mycophenolic acid | Penicillium roqueforti FM164
BGC0000104.1 |  | 0.08 | Polyketide, Terpene | mycophenolic acid | Penicillium brevicompactum
BGC0001371.1 |  | 0.06 | NRP | echinocandin B | Aspergillus nidulans NRRL 8112

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.47 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.47 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000599.1 |  | 0.42 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001937.1 |  | 0.39 | Other | tubercidin | Streptomyces tubercidicus
BGC0001677.1 |  | 0.38 | Polyketide | mycophenolic acid | Penicillium roqueforti
BGC0000879.1 |  | 0.36 | Other | toyocamycin, sangivamycin | Streptomyces rimosus
BGC0000807.1 |  | 0.35 | Saccharide | phosphonoglycans | Stackebrandtia nassauensis DSM 44728
BGC0001360.1 |  | 0.33 | Polyketide | mycophenolic acid | Penicillium roqueforti FM164
BGC0000104.1 |  | 0.30 | Polyketide, Terpene | mycophenolic acid | Penicillium brevicompactum
BGC0001371.1 |  | 0.25 | NRP | echinocandin B | Aspergillus nidulans NRRL 8112

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_DS483501.1 - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 127,440 - 148,027 nt. (total: 20,588 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.15 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000923.1 |  | 0.14 | Other | paerucumarin | Pseudomonas aeruginosa PAO1
BGC0001521.1 |  | 0.14 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0001485.1 |  | 0.10 | Other | 3-demethylchuangxinmycin | Actinoplanes tsinanensis
BGC0001546.1 |  | 0.10 | Alkaloid | chuangxinmycin | Actinoplanes tsinanensis
BGC0000997.1 |  | 0.04 | NRP, Polyketide | glidobactin | [Polyangium] brachysporum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000923.1 |  | 0.44 | Other | paerucumarin | Pseudomonas aeruginosa PAO1
BGC0001521.1 |  | 0.42 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0001485.1 |  | 0.36 | Other | 3-demethylchuangxinmycin | Actinoplanes tsinanensis
BGC0001546.1 |  | 0.36 | Alkaloid | chuangxinmycin | Actinoplanes tsinanensis
BGC0000997.1 |  | 0.20 | NRP, Polyketide | glidobactin | [Polyangium] brachysporum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names