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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP089331.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 963,153 | 984,031 |
Region 1.2 | RiPP-like | 3,295,666 | 3,306,478 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 963,153 | 984,031 |
Region 1.2 | RiPP-like | 3,295,666 | 3,306,478 |

No secondary metabolite regions were found in these records:
  NZ_CP089332.1

Compact view
NZ_CP089331.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 963,153 - 984,031 nt. (total: 20,879 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.46 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.23 | Terpene | carotenoid | Myxococcus xanthus
BGC0000656.1 |  | 0.23 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000646.1 |  | 0.21 | Terpene | β-carotein | uncultured bacterium
BGC0000640.1 |  | 0.21 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.20 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000637.1 |  | 0.19 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000664.1 |  | 0.19 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000639.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000641.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.76 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.57 | Terpene | carotenoid | Myxococcus xanthus
BGC0000656.1 |  | 0.56 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000646.1 |  | 0.53 | Terpene | β-carotein | uncultured bacterium
BGC0000640.1 |  | 0.53 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000630.1 |  | 0.52 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000637.1 |  | 0.52 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000664.1 |  | 0.51 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000639.1 |  | 0.51 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000641.1 |  | 0.51 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP089331.1 - Region 2 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,295,666 - 3,306,478 nt. (total: 10,813 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000506.1 |  | 0.06 | RiPP | entianin | Bacillus subtilis subsp. spizizenii
BGC0000559.1 |  | 0.05 | RiPP | subtilin | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000536.1 |  | 0.05 | RiPP | nisin Q | Lactococcus lactis
BGC0000535.1 |  | 0.05 | RiPP | nisin A | Lactococcus lactis subsp. lactis
BGC0001789.1 |  | 0.05 | RiPP | suicin 90-1330 | Streptococcus suis
BGC0000260.1 |  | 0.04 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0001701.1 |  | 0.04 | RiPP | nisin O | Blautia obeum
BGC0001377.1 |  | 0.04 | Polyketide | uncialamycin | Streptomyces uncialis
BGC0001815.1 |  | 0.04 | Polyketide | uncialamycin | Streptomyces uncialis
BGC0001804.1 |  | 0.03 | Polyketide | tiancimycin | Streptomyces sp. CB03234

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000506.1 |  | 0.25 | RiPP | entianin | Bacillus subtilis subsp. spizizenii
BGC0000559.1 |  | 0.23 | RiPP | subtilin | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000536.1 |  | 0.23 | RiPP | nisin Q | Lactococcus lactis
BGC0000535.1 |  | 0.23 | RiPP | nisin A | Lactococcus lactis subsp. lactis
BGC0001789.1 |  | 0.23 | RiPP | suicin 90-1330 | Streptococcus suis
BGC0000260.1 |  | 0.19 | Polyketide | prodigiosin | Hahella chejuensis KCTC 2396
BGC0001701.1 |  | 0.19 | RiPP | nisin O | Blautia obeum
BGC0001377.1 |  | 0.18 | Polyketide | uncialamycin | Streptomyces uncialis
BGC0001815.1 |  | 0.18 | Polyketide | uncialamycin | Streptomyces uncialis
BGC0001804.1 |  | 0.16 | Polyketide | tiancimycin | Streptomyces sp. CB03234

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names