GCF_001405015.1_13470_2_75_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CYZX01000003 (original name was: NZ_CYZX01000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	ranthipeptide	53,614	74,966

NZ_CYZX01000007 (original name was: NZ_CYZX01000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	cyclic-lactone-autoinducer	118,929	139,713

NZ_CYZX01000012 (original name was: NZ_CYZX01000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RRE-containing	65,531	85,827

Region	Type	From	To	Similarity
Region 3.1	ranthipeptide	53,614	74,966
Region 7.1	cyclic-lactone-autoinducer	118,929	139,713
Region 12.1	RRE-containing	65,531	85,827

No secondary metabolite regions were found in these records:: NZ_CYZX01000001 (original name was: NZ_CYZX01000001.1); NZ_CYZX01000002 (original name was: NZ_CYZX01000002.1); NZ_CYZX01000004 (original name was: NZ_CYZX01000004.1); NZ_CYZX01000005 (original name was: NZ_CYZX01000005.1); NZ_CYZX01000006 (original name was: NZ_CYZX01000006.1); NZ_CYZX01000008 (original name was: NZ_CYZX01000008.1); NZ_CYZX01000009 (original name was: NZ_CYZX01000009.1); NZ_CYZX01000010 (original name was: NZ_CYZX01000010.1); NZ_CYZX01000011 (original name was: NZ_CYZX01000011.1); NZ_CYZX01000013 (original name was: NZ_CYZX01000013.1); NZ_CYZX01000014 (original name was: NZ_CYZX01000014.1); NZ_CYZX01000015 (original name was: NZ_CYZX01000015.1); NZ_CYZX01000016 (original name was: NZ_CYZX01000016.1); NZ_CYZX01000017 (original name was: NZ_CYZX01000017.1); NZ_CYZX01000018 (original name was: NZ_CYZX01000018.1); NZ_CYZX01000019 (original name was: NZ_CYZX01000019.1); NZ_CYZX01000020 (original name was: NZ_CYZX01000020.1); NZ_CYZX01000021 (original name was: NZ_CYZX01000021.1); NZ_CYZX01000022 (original name was: NZ_CYZX01000022.1); NZ_CYZX01000023 (original name was: NZ_CYZX01000023.1); NZ_CYZX01000024 (original name was: NZ_CYZX01000024.1); NZ_CYZX01000025 (original name was: NZ_CYZX01000025.1); NZ_CYZX01000026 (original name was: NZ_CYZX01000026.1); NZ_CYZX01000027 (original name was: NZ_CYZX01000027.1); NZ_CYZX01000028 (original name was: NZ_CYZX01000028.1); NZ_CYZX01000029 (original name was: NZ_CYZX01000029.1); NZ_CYZX01000030 (original name was: NZ_CYZX01000030.1); NZ_CYZX01000031 (original name was: NZ_CYZX01000031.1); NZ_CYZX01000032 (original name was: NZ_CYZX01000032.1); NZ_CYZX01000033 (original name was: NZ_CYZX01000033.1); NZ_CYZX01000034 (original name was: NZ_CYZX01000034.1); NZ_CYZX01000035 (original name was: NZ_CYZX01000035.1); NZ_CYZX01000036 (original name was: NZ_CYZX01000036.1); NZ_CYZX01000037 (original name was: NZ_CYZX01000037.1); NZ_CYZX01000038 (original name was: NZ_CYZX01000038.1); NZ_CYZX01000039 (original name was: NZ_CYZX01000039.1); NZ_CYZX01000040 (original name was: NZ_CYZX01000040.1); NZ_CYZX01000041 (original name was: NZ_CYZX01000041.1); NZ_CYZX01000042 (original name was: NZ_CYZX01000042.1); NZ_CYZX01000043 (original name was: NZ_CYZX01000043.1); NZ_CYZX01000044 (original name was: NZ_CYZX01000044.1); NZ_CYZX01000045 (original name was: NZ_CYZX01000045.1); NZ_CYZX01000046 (original name was: NZ_CYZX01000046.1); NZ_CYZX01000047 (original name was: NZ_CYZX01000047.1); NZ_CYZX01000048 (original name was: NZ_CYZX01000048.1); NZ_CYZX01000049 (original name was: NZ_CYZX01000049.1); NZ_CYZX01000050 (original name was: NZ_CYZX01000050.1); NZ_CYZX01000051 (original name was: NZ_CYZX01000051.1); NZ_CYZX01000052 (original name was: NZ_CYZX01000052.1); NZ_CYZX01000053 (original name was: NZ_CYZX01000053.1); NZ_CYZX01000054 (original name was: NZ_CYZX01000054.1)

Compact view

c00003_NZ_CYZX.. - Region 1 - ranthipeptide

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Location: 53,614 - 74,966 nt. (total: 21,353 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.21	RiPP	thurincin H	Bacillus thuringiensis
BGC0000938.1	0.21	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000548.1	0.17	RiPP	salivaricin A	Streptococcus salivarius
BGC0000487.1	0.17	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001525.1	0.17	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.17	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000502.1	0.16	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.53	RiPP	thurincin H	Bacillus thuringiensis
BGC0000938.1	0.53	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000548.1	0.49	RiPP	salivaricin A	Streptococcus salivarius
BGC0000487.1	0.48	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001525.1	0.48	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001526.1	0.48	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000502.1	0.47	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00007_NZ_CYZX.. - Region 1 - cyclic-lactone-autoinducer

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Location: 118,929 - 139,713 nt. (total: 20,785 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000853.1	0.24	Other	ectoine	Streptomyces anulatus
BGC0000858.1	0.24	Other	ectoine	Methylobacter marinus
BGC0000852.1	0.24	Other	ectoine	Sporosarcina pasteurii
BGC0000856.1	0.23	Other	ectoine	Methylophaga thalassica
BGC0000855.1	0.23	Other	ectoine	Methylomicrobium kenyense
BGC0000859.1	0.23	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000860.1	0.18	Other	ectoine	Methylarcula marina
BGC0000857.1	0.18	Other	ectoine	Methylophaga alcalica
BGC0000854.1	0.18	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000663.1	0.16	Terpene	hopene	Streptomyces coelicolor A3(2)

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000853.1	0.57	Other	ectoine	Streptomyces anulatus
BGC0000858.1	0.57	Other	ectoine	Methylobacter marinus
BGC0000852.1	0.57	Other	ectoine	Sporosarcina pasteurii
BGC0000856.1	0.57	Other	ectoine	Methylophaga thalassica
BGC0000855.1	0.56	Other	ectoine	Methylomicrobium kenyense
BGC0000859.1	0.56	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000860.1	0.50	Other	ectoine	Methylarcula marina
BGC0000857.1	0.50	Other	ectoine	Methylophaga alcalica
BGC0000854.1	0.50	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000663.1	0.47	Terpene	hopene	Streptomyces coelicolor A3(2)

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00012_NZ_CYZX.. - Region 1 - RRE-containing

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Location: 65,531 - 85,827 nt. (total: 20,297 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001634.1	0.19	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0001526.1	0.18	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.17	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001889.1	0.16	RiPP	fusilassin	Thermobifida fusca YX
BGC0001356.1	0.16	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001407.1	0.15	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000592.1	0.15	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000789.1	0.15	Saccharide	O-antigen	Escherichia coli
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001634.1	0.51	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0001526.1	0.49	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.48	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001889.1	0.47	RiPP	fusilassin	Thermobifida fusca YX
BGC0001356.1	0.47	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001407.1	0.46	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000592.1	0.46	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000789.1	0.45	Saccharide	O-antigen	Escherichia coli
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names