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Overview
12.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JHXG01000014 (original name was: NZ_JHXG01000014.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | RRE-containing | 1 | 19,911 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | RRE-containing | 1 | 19,911 |

No secondary metabolite regions were found in these records:
  NZ_KK211352.1
  NZ_JHXG01000003 (original name was: NZ_JHXG01000003.1)
  NZ_KK211353.1
  NZ_JHXG01000006 (original name was: NZ_JHXG01000006.1)
  NZ_JHXG01000007 (original name was: NZ_JHXG01000007.1)
  NZ_JHXG01000008 (original name was: NZ_JHXG01000008.1)
  NZ_JHXG01000009 (original name was: NZ_JHXG01000009.1)
  NZ_JHXG01000010 (original name was: NZ_JHXG01000010.1)
  NZ_JHXG01000011 (original name was: NZ_JHXG01000011.1)
  NZ_JHXG01000012 (original name was: NZ_JHXG01000012.1)
  NZ_JHXG01000013 (original name was: NZ_JHXG01000013.1)
  NZ_JHXG01000015 (original name was: NZ_JHXG01000015.1)
  NZ_JHXG01000016 (original name was: NZ_JHXG01000016.1)
  NZ_JHXG01000017 (original name was: NZ_JHXG01000017.1)
  NZ_JHXG01000018 (original name was: NZ_JHXG01000018.1)
  NZ_JHXG01000019 (original name was: NZ_JHXG01000019.1)
  NZ_JHXG01000020 (original name was: NZ_JHXG01000020.1)
  NZ_JHXG01000021 (original name was: NZ_JHXG01000021.1)
  NZ_JHXG01000022 (original name was: NZ_JHXG01000022.1)
  NZ_JHXG01000023 (original name was: NZ_JHXG01000023.1)
  NZ_JHXG01000024 (original name was: NZ_JHXG01000024.1)

Compact view
c00012_NZ_JHXG.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1 - 19,911 nt. (total: 19,911 nt) Show pHMM detection rules used
Region on contig edge.
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
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Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000550.1 |  | 0.16 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0000466.1 |  | 0.14 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0001540.1 |  | 0.14 | Other | CC-1065 | Streptomyces zelensis
BGC0001607.1 |  | 0.14 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0000703.1 |  | 0.13 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000557.1 |  | 0.12 | RiPP | streptococcin A-FF22 | Streptococcus pyogenes
BGC0000527.1 |  | 0.11 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000043.1 |  | 0.11 | Polyketide | curacin A | Moorea producens 19L
BGC0000547.1 |  | 0.11 | RiPP | salivaricin 9 | Streptococcus salivarius
BGC0000545.1 |  | 0.11 | RiPP | ruminococcin A | [Ruminococcus] gnavus E1

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000550.1 |  | 0.46 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0000466.1 |  | 0.44 | NRP | yatakemycin | Streptomyces sp. TP-A2060
BGC0001540.1 |  | 0.43 | Other | CC-1065 | Streptomyces zelensis
BGC0001607.1 |  | 0.43 | Other | gilvusmycin | Streptomyces sp. NRRL B-1347
BGC0000703.1 |  | 0.42 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000557.1 |  | 0.40 | RiPP | streptococcin A-FF22 | Streptococcus pyogenes
BGC0000527.1 |  | 0.39 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000043.1 |  | 0.38 | Polyketide | curacin A | Moorea producens 19L
BGC0000547.1 |  | 0.38 | RiPP | salivaricin 9 | Streptococcus salivarius
BGC0000545.1 |  | 0.37 | RiPP | ruminococcin A | [Ruminococcus] gnavus E1

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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