Select genomic region:
Overview
44.1
58.1
82.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_FQXK01000003 (original name was: NZ_FQXK01000003.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 44.1 | lanthipeptide-class-ii,cyclic-lactone-autoinducer,ranthipeptide | 203,216 | 253,076 | carnolysin A1 / carnolysin A2 | RiPP:Lanthipeptide | 71%

NZ_FQXK01000012 (original name was: NZ_FQXK01000012.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 58.1 | lassopeptide,RRE-containing | 54,152 | 88,655 |

NZ_FQXK01000046 (original name was: NZ_FQXK01000046.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 82.1 | ranthipeptide | 1 | 12,561 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 44.1 | lanthipeptide-class-ii,cyclic-lactone-autoinducer,ranthipeptide | 203,216 | 253,076 | carnolysin A1 / carnolysin A2 | RiPP:Lanthipeptide | 71%
Region 58.1 | lassopeptide,RRE-containing | 54,152 | 88,655 |
Region 82.1 | ranthipeptide | 1 | 12,561 |

No secondary metabolite regions were found in these records:
  NZ_FQXK01000079 (original name was: NZ_FQXK01000079.1)
  NZ_FQXK01000075 (original name was: NZ_FQXK01000075.1)
  NZ_FQXK01000081 (original name was: NZ_FQXK01000081.1)
  NZ_FQXK01000078 (original name was: NZ_FQXK01000078.1)
  NZ_FQXK01000072 (original name was: NZ_FQXK01000072.1)
  NZ_FQXK01000070 (original name was: NZ_FQXK01000070.1)
  NZ_FQXK01000067 (original name was: NZ_FQXK01000067.1)
  NZ_FQXK01000065 (original name was: NZ_FQXK01000065.1)
  NZ_FQXK01000083 (original name was: NZ_FQXK01000083.1)
  NZ_FQXK01000064 (original name was: NZ_FQXK01000064.1)
  NZ_FQXK01000063 (original name was: NZ_FQXK01000063.1)
  NZ_FQXK01000062 (original name was: NZ_FQXK01000062.1)
  NZ_FQXK01000061 (original name was: NZ_FQXK01000061.1)
  NZ_FQXK01000060 (original name was: NZ_FQXK01000060.1)
  NZ_FQXK01000059 (original name was: NZ_FQXK01000059.1)
  NZ_FQXK01000053 (original name was: NZ_FQXK01000053.1)
  NZ_FQXK01000052 (original name was: NZ_FQXK01000052.1)
  NZ_FQXK01000051 (original name was: NZ_FQXK01000051.1)
  NZ_FQXK01000054 (original name was: NZ_FQXK01000054.1)
  NZ_FQXK01000049 (original name was: NZ_FQXK01000049.1)
  NZ_FQXK01000047 (original name was: NZ_FQXK01000047.1)
  NZ_FQXK01000048 (original name was: NZ_FQXK01000048.1)
  NZ_FQXK01000021 (original name was: NZ_FQXK01000021.1)
  NZ_FQXK01000023 (original name was: NZ_FQXK01000023.1)
  NZ_FQXK01000019 (original name was: NZ_FQXK01000019.1)
  NZ_FQXK01000017 (original name was: NZ_FQXK01000017.1)
  NZ_FQXK01000076 (original name was: NZ_FQXK01000076.1)
  NZ_FQXK01000024 (original name was: NZ_FQXK01000024.1)
  NZ_FQXK01000055 (original name was: NZ_FQXK01000055.1)
  NZ_FQXK01000018 (original name was: NZ_FQXK01000018.1)
  NZ_FQXK01000001 (original name was: NZ_FQXK01000001.1)
  NZ_FQXK01000036 (original name was: NZ_FQXK01000036.1)
  NZ_FQXK01000016 (original name was: NZ_FQXK01000016.1)
  NZ_FQXK01000057 (original name was: NZ_FQXK01000057.1)
  NZ_FQXK01000015 (original name was: NZ_FQXK01000015.1)
  NZ_FQXK01000080 (original name was: NZ_FQXK01000080.1)
  NZ_FQXK01000014 (original name was: NZ_FQXK01000014.1)
  NZ_FQXK01000068 (original name was: NZ_FQXK01000068.1)
  NZ_FQXK01000005 (original name was: NZ_FQXK01000005.1)
  NZ_FQXK01000073 (original name was: NZ_FQXK01000073.1)
  NZ_FQXK01000042 (original name was: NZ_FQXK01000042.1)
  NZ_FQXK01000022 (original name was: NZ_FQXK01000022.1)
  NZ_FQXK01000058 (original name was: NZ_FQXK01000058.1)
  NZ_FQXK01000030 (original name was: NZ_FQXK01000030.1)
  NZ_FQXK01000010 (original name was: NZ_FQXK01000010.1)
  NZ_FQXK01000020 (original name was: NZ_FQXK01000020.1)
  NZ_FQXK01000007 (original name was: NZ_FQXK01000007.1)
  NZ_FQXK01000027 (original name was: NZ_FQXK01000027.1)
  NZ_FQXK01000011 (original name was: NZ_FQXK01000011.1)
  NZ_FQXK01000009 (original name was: NZ_FQXK01000009.1)
  NZ_FQXK01000004 (original name was: NZ_FQXK01000004.1)
  NZ_FQXK01000006 (original name was: NZ_FQXK01000006.1)
  NZ_FQXK01000056 (original name was: NZ_FQXK01000056.1)
  NZ_FQXK01000008 (original name was: NZ_FQXK01000008.1)
  NZ_FQXK01000025 (original name was: NZ_FQXK01000025.1)
  NZ_FQXK01000050 (original name was: NZ_FQXK01000050.1)
  NZ_FQXK01000026 (original name was: NZ_FQXK01000026.1)
  NZ_FQXK01000028 (original name was: NZ_FQXK01000028.1)
  NZ_FQXK01000071 (original name was: NZ_FQXK01000071.1)
  NZ_FQXK01000029 (original name was: NZ_FQXK01000029.1)
  NZ_FQXK01000033 (original name was: NZ_FQXK01000033.1)
  NZ_FQXK01000034 (original name was: NZ_FQXK01000034.1)
  NZ_FQXK01000031 (original name was: NZ_FQXK01000031.1)
  NZ_FQXK01000039 (original name was: NZ_FQXK01000039.1)
  NZ_FQXK01000077 (original name was: NZ_FQXK01000077.1)
  NZ_FQXK01000041 (original name was: NZ_FQXK01000041.1)
  NZ_FQXK01000074 (original name was: NZ_FQXK01000074.1)
  NZ_FQXK01000032 (original name was: NZ_FQXK01000032.1)
  NZ_FQXK01000044 (original name was: NZ_FQXK01000044.1)
  NZ_FQXK01000035 (original name was: NZ_FQXK01000035.1)
  NZ_FQXK01000069 (original name was: NZ_FQXK01000069.1)
  NZ_FQXK01000037 (original name was: NZ_FQXK01000037.1)
  NZ_FQXK01000082 (original name was: NZ_FQXK01000082.1)
  NZ_FQXK01000066 (original name was: NZ_FQXK01000066.1)
  NZ_FQXK01000038 (original name was: NZ_FQXK01000038.1)
  NZ_FQXK01000013 (original name was: NZ_FQXK01000013.1)
  NZ_FQXK01000043 (original name was: NZ_FQXK01000043.1)
  NZ_FQXK01000040 (original name was: NZ_FQXK01000040.1)
  NZ_FQXK01000045 (original name was: NZ_FQXK01000045.1)

Compact view
c00044_NZ_FQXK.. - Region 1 - cyclic-lactone-autoinducer,lanthipeptide-class-ii,ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 203,216 - 253,076 nt. (total: 49,861 nt) Show pHMM detection rules used
lanthipeptide-class-ii: cds(LANC_like and DUF4135)
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Lanthipeptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | lanthipeptide-class-ii | cyclic-lactone-autoinducer | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | --- | ---
BGC0000500.1 |  |  |  | 0.70 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  |  |  | 0.63 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000517.1 |  |  |  | 0.51 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0001639.1 |  |  |  | 0.46 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0000516.1 |  |  |  | 0.45 | RiPP | geobacillin II | Geobacillus thermodenitrificans
BGC0000543.1 |  |  |  | 0.45 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000560.1 |  |  |  | 0.44 | RiPP | subtilomycin | Bacillus subtilis
BGC0001210.1 |  |  |  | 0.43 | RiPP | pseudomycoicidin | Bacillus pseudomycoides DSM 12442
BGC0001311.1 |  |  |  | 0.42 | RiPP | flavecins | Ruminococcus flavefaciens FD-1
BGC0000552.1 |  |  |  | 0.42 | RiPP | SmbA, SmbB | Streptococcus mutans

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000500.1 |  | 0.66 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000554.1 |  | 0.65 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000626.1 |  | 0.61 | RiPP | thuricin | Bacillus thuringiensis
BGC0000525.1 |  | 0.59 | RiPP | lichenicidin VK21 A1, lichenicidin VK21 A2 | Bacillus licheniformis
BGC0000516.1 |  | 0.59 | RiPP | geobacillin II | Geobacillus thermodenitrificans
BGC0000504.1 |  | 0.59 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000517.1 |  | 0.58 | RiPP | haloduracin β, haloduracin α | Bacillus halodurans C-125
BGC0000521.1 |  | 0.57 | RiPP | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0001311.1 |  | 0.57 | RiPP | flavecins | Ruminococcus flavefaciens FD-1
BGC0000552.1 |  | 0.57 | RiPP | SmbA, SmbB | Streptococcus mutans

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lanthipeptide(s) for ctg44_188 - Putative Class II

ctg44_186 leader / core peptide
  MTQENMNRIVGETFEDMSVAEMTMVQGS - GDLGAEFDhb Dhb DhaPACVALDhbVAAAQQDha DhaNNCAVAIDhaGDhaLDhaAIGDhaAVLDhaAIKC
ctg44_187 leader / core peptide
  MSSVDMKNIVGDSFEDMSIAEMAMVQGS - GDLEGEDhaVIADhbLLAVDhaAAVGDhaAAGAIQVVKDhbIKGDhb C
allorf_217330_217422 leader / core peptide
  LSISSSFIYA - DhaGDhb CNCPLFQYDhbHDVMVYFD
allorf_218253_218327 leader / core peptide
  LRIIVHRLLTVHGI - NVVKFDha CKDhaA
allorf_224954_225154 leader / core peptide
  LELRKIVDKEIIDEALYWG - AYQVRIIKKYDhaLCNLVKIVLIDDhbNKQIVVDQDAILDhaHKEKDhaIRLLRR

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg44_186 - Class II
  Cleavage pHMM score: -0.60
  RODEO score: 0
  Monoisotopic mass: 4426.3 Da
  Molecular weight: 4429.0 Da
  Number of bridges: 3
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    4447.0 Da N = 1
    4465.0 Da N = 2
    4483.0 Da N = 3
    4501.0 Da N = 4
    4519.1 Da N = 5
    4537.1 Da N = 6
    4555.1 Da N = 7
    4573.1 Da N = 8
ctg44_187 - Class II
  Cleavage pHMM score: 0.90
  RODEO score: 0
  Monoisotopic mass: 3290.8 Da
  Molecular weight: 3292.8 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    3310.8 Da N = 1
    3328.8 Da N = 2
    3346.8 Da N = 3
    3364.9 Da N = 4
    3382.9 Da N = 5
allorf_217330_217422 - Class II
  Cleavage pHMM score: -6.70
  RODEO score: 0
  Monoisotopic mass: 2285.0 Da
  Molecular weight: 2286.5 Da
  Number of bridges: 2
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    2304.6 Da N = 1
allorf_218253_218327 - Class II
  Cleavage pHMM score: -5.50
  RODEO score: 0
  Monoisotopic mass: 1045.6 Da
  Molecular weight: 1046.2 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    1064.3 Da N = 1
allorf_224954_225154 - Class II
  Cleavage pHMM score: -4.60
  RODEO score: 0
  Monoisotopic mass: 5461.2 Da
  Molecular weight: 5464.5 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    5482.5 Da N = 1
    5500.5 Da N = 2
    5518.6 Da N = 3

c00058_NZ_FQXK.. - Region 1 - RRE-containing,lassopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 54,152 - 88,655 nt. (total: 34,504 nt) Show pHMM detection rules used
lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Lasso peptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | lassopeptide | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0001634.1 |  |  | 0.62 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0000885.1 |  |  | 0.50 | Other | 4-hydroxy-3-nitrosobenzamide | Streptomyces murayamaensis
BGC0000571.1 |  |  | 0.50 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001639.1 |  |  | 0.45 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0000578.1 |  |  | 0.43 | RiPP | SRO15-2005 | Streptomyces filamentosus NRRL 15998
BGC0001356.1 |  |  | 0.42 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0000796.1 |  |  | 0.36 | Saccharide | S-layer glycan | Paenibacillus alvei
BGC0001395.1 |  |  | 0.34 | Other | teichomycin | Actinoplanes teichomyceticus
BGC0000500.1 |  |  | 0.31 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000516.1 |  |  | 0.31 | RiPP | geobacillin II | Geobacillus thermodenitrificans

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001634.1 |  | 0.65 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0000885.1 |  | 0.59 | Other | 4-hydroxy-3-nitrosobenzamide | Streptomyces murayamaensis
BGC0000571.1 |  | 0.59 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0000796.1 |  | 0.57 | Saccharide | S-layer glycan | Paenibacillus alvei
BGC0000578.1 |  | 0.56 | RiPP | SRO15-2005 | Streptomyces filamentosus NRRL 15998
BGC0001639.1 |  | 0.56 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0001356.1 |  | 0.54 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0001395.1 |  | 0.51 | Other | teichomycin | Actinoplanes teichomyceticus
BGC0000716.1 |  | 0.49 | Saccharide | spectinomycin | Streptomyces netropsis
BGC0000742.1 |  | 0.48 | Saccharide | capsular polysaccharide | Streptococcus agalactiae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lasso peptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lassopeptide(s) for ctg58_62 - Putative Class II

ctg58_62 leader / core peptide / cleaved tail
  MKAWNTPVMESLEINETAGGYNQITE - HDGVINYSAGIPAEEYASGPLPR

#### Legend:

Red: Putative macrolactam
Purple: Putative cleaved off residues
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Lasso peptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of disulfide bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg58_62 - Class II
  Cleavage pHMM score: -11.50
  RODEO score: 19
  Monoisotopic mass: 2394.2 Da
  Molecular weight: 2395.6 Da
  Number of bridges: 0

c00082_NZ_FQXK.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 12,561 nt. (total: 12,561 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000695.1 |  | 0.08 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0000599.1 |  | 0.08 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000695.1 |  | 0.32 | Saccharide | fortimicin | Micromonospora olivasterospora
BGC0000599.1 |  | 0.30 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names