Select genomic region:
Overview
11.1
24.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JMPN01000011 (original name was: NZ_JMPN01000011.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 11.1 | hserlactone | 578,833 | 599,390 | yersiniabactin | NRP + Polyketide | 4%

NZ_JMPN01000025 (original name was: NZ_JMPN01000025.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 24.1 | arylpolyene | 57,410 | 101,015 | aryl polyenes | Other | 72%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 11.1 | hserlactone | 578,833 | 599,390 | yersiniabactin | NRP + Polyketide | 4%
Region 24.1 | arylpolyene | 57,410 | 101,015 | aryl polyenes | Other | 72%

No secondary metabolite regions were found in these records:
  NZ_JMPN01000001 (original name was: NZ_JMPN01000001.1)
  NZ_JMPN01000002 (original name was: NZ_JMPN01000002.1)
  NZ_JMPN01000003 (original name was: NZ_JMPN01000003.1)
  NZ_JMPN01000004 (original name was: NZ_JMPN01000004.1)
  NZ_JMPN01000005 (original name was: NZ_JMPN01000005.1)
  NZ_JMPN01000006 (original name was: NZ_JMPN01000006.1)
  NZ_JMPN01000007 (original name was: NZ_JMPN01000007.1)
  NZ_JMPN01000008 (original name was: NZ_JMPN01000008.1)
  NZ_JMPN01000009 (original name was: NZ_JMPN01000009.1)
  NZ_JMPN01000010 (original name was: NZ_JMPN01000010.1)
  NZ_JMPN01000013 (original name was: NZ_JMPN01000013.1)
  NZ_JMPN01000014 (original name was: NZ_JMPN01000014.1)
  NZ_JMPN01000015 (original name was: NZ_JMPN01000015.1)
  NZ_JMPN01000016 (original name was: NZ_JMPN01000016.1)
  NZ_JMPN01000017 (original name was: NZ_JMPN01000017.1)
  NZ_JMPN01000018 (original name was: NZ_JMPN01000018.1)
  NZ_JMPN01000019 (original name was: NZ_JMPN01000019.1)
  NZ_JMPN01000020 (original name was: NZ_JMPN01000020.1)
  NZ_JMPN01000021 (original name was: NZ_JMPN01000021.1)
  NZ_JMPN01000022 (original name was: NZ_JMPN01000022.1)
  NZ_JMPN01000023 (original name was: NZ_JMPN01000023.1)
  NZ_JMPN01000024 (original name was: NZ_JMPN01000024.1)
  NZ_JMPN01000026 (original name was: NZ_JMPN01000026.1)
  NZ_JMPN01000027 (original name was: NZ_JMPN01000027.1)
  NZ_JMPN01000028 (original name was: NZ_JMPN01000028.1)
  NZ_JMPN01000029 (original name was: NZ_JMPN01000029.1)
  NZ_JMPN01000030 (original name was: NZ_JMPN01000030.1)
  NZ_JMPN01000031 (original name was: NZ_JMPN01000031.1)
  NZ_JMPN01000032 (original name was: NZ_JMPN01000032.1)
  NZ_JMPN01000033 (original name was: NZ_JMPN01000033.1)
  NZ_JMPN01000034 (original name was: NZ_JMPN01000034.1)
  NZ_JMPN01000035 (original name was: NZ_JMPN01000035.1)
  NZ_JMPN01000036 (original name was: NZ_JMPN01000036.1)
  NZ_JMPN01000037 (original name was: NZ_JMPN01000037.1)
  NZ_JMPN01000038 (original name was: NZ_JMPN01000038.1)
  NZ_JMPN01000039 (original name was: NZ_JMPN01000039.1)
  NZ_JMPN01000040 (original name was: NZ_JMPN01000040.1)
  NZ_JMPN01000041 (original name was: NZ_JMPN01000041.1)

Compact view
c00011_NZ_JMPN.. - Region 1 - hserlactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 578,833 - 599,390 nt. (total: 20,558 nt) Show pHMM detection rules used
hserlactone: Autoind_synth

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | hserlactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001897.1 |  | 0.19 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001514.1 |  | 0.13 | Other | aristeromycin | Streptomyces citricolor
BGC0001437.1 |  | 0.09 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001710.1 |  | 0.09 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001480.1 |  | 0.09 | Other | tundrenone | Methylobacter tundripaludum 21/22
BGC0000818.1 |  | 0.08 | NRP | notoamide A | Aspergillus versicolor
BGC0000961.1 |  | 0.07 | NRP, Polyketide | bactobolin | Burkholderia thailandensis E264
BGC0001055.1 |  | 0.07 | NRP, Polyketide | yersiniabactin | Escherichia coli
BGC0001767.1 |  | 0.06 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0001047.1 |  | 0.06 | NRP, Polyketide | syringolin A | Pseudomonas syringae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001897.1 |  | 0.51 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001514.1 |  | 0.42 | Other | aristeromycin | Streptomyces citricolor
BGC0001437.1 |  | 0.34 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001710.1 |  | 0.34 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001480.1 |  | 0.33 | Other | tundrenone | Methylobacter tundripaludum 21/22
BGC0000818.1 |  | 0.32 | NRP | notoamide A | Aspergillus versicolor
BGC0000961.1 |  | 0.28 | NRP, Polyketide | bactobolin | Burkholderia thailandensis E264
BGC0001055.1 |  | 0.28 | NRP, Polyketide | yersiniabactin | Escherichia coli
BGC0001767.1 |  | 0.26 | NRP | salinichelins | Salinispora pacifica CNY331
BGC0001047.1 |  | 0.25 | NRP, Polyketide | syringolin A | Pseudomonas syringae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00024_NZ_JMPN.. - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 57,410 - 101,015 nt. (total: 43,606 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002008.1 |  | 0.41 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.39 | Other | APE Ec | Escherichia coli CFT073
BGC0000837.1 |  | 0.29 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0001075.1 |  | 0.28 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000194.1 |  | 0.24 | Polyketide | actinorhodin | Streptomyces coelicolor A3(2)
BGC0000873.1 |  | 0.23 | Other | A-201A | Saccharothrix mutabilis subsp. capreolus
BGC0000234.1 |  | 0.23 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000221.1 |  | 0.22 | Polyketide | erdacin | uncultured soil bacterium V167
BGC0000219.1 |  | 0.22 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus
BGC0001897.1 |  | 0.22 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002008.1 |  | 0.73 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.71 | Other | APE Ec | Escherichia coli CFT073
BGC0000837.1 |  | 0.62 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0001075.1 |  | 0.61 | Terpene, Polyketide | aurachin RE | Rhodococcus erythropolis
BGC0000194.1 |  | 0.57 | Polyketide | actinorhodin | Streptomyces coelicolor A3(2)
BGC0000873.1 |  | 0.57 | Other | A-201A | Saccharothrix mutabilis subsp. capreolus
BGC0000234.1 |  | 0.56 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0000221.1 |  | 0.55 | Polyketide | erdacin | uncultured soil bacterium V167
BGC0000219.1 |  | 0.54 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus
BGC0001897.1 |  | 0.54 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names