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Overview
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1.2
1.3
1.4

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP072255.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | resorcinol | 1,019,082 | 1,060,224 |
Region 1.2 | betalactone | 1,199,572 | 1,222,329 |
Region 1.3 | RRE-containing | 2,767,975 | 2,785,907 |
Region 1.4 | RRE-containing | 4,767,860 | 4,788,126 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | resorcinol | 1,019,082 | 1,060,224 |
Region 1.2 | betalactone | 1,199,572 | 1,222,329 |
Region 1.3 | RRE-containing | 2,767,975 | 2,785,907 |
Region 1.4 | RRE-containing | 4,767,860 | 4,788,126 |

No secondary metabolite regions were found in these records:
  NZ_CP072256.1

Compact view
NZ_CP072255.1 - Region 1 - resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,019,082 - 1,060,224 nt. (total: 41,143 nt) Show pHMM detection rules used
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001197.1 |  | 0.20 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001526.1 |  | 0.16 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001525.1 |  | 0.16 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000667.1 |  | 0.16 | Terpene | PR-toxin | Penicillium roqueforti FM164
BGC0000509.1 |  | 0.16 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0001928.1 |  | 0.14 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0000204.1 |  | 0.14 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0001156.1 |  | 0.14 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.14 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000866.1 |  | 0.14 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001197.1 |  | 0.53 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001526.1 |  | 0.47 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0001525.1 |  | 0.47 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000667.1 |  | 0.46 | Terpene | PR-toxin | Penicillium roqueforti FM164
BGC0000509.1 |  | 0.46 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0001928.1 |  | 0.44 | Other | (2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid | Streptomyces sp. MA37
BGC0000204.1 |  | 0.44 | Polyketide | benastatin A, benastatin B, BE-43767, TAN1532B | Streptomyces sp. A2991200
BGC0001156.1 |  | 0.44 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.44 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0000866.1 |  | 0.43 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072255.1 - Region 2 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,199,572 - 1,222,329 nt. (total: 22,758 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001411.1 |  | 0.25 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0000720.1 |  | 0.25 | Saccharide | tobramycin | Streptoalloteichus tenebrarius
BGC0000836.1 |  | 0.22 | Other | APE Ec | Escherichia coli CFT073
BGC0002008.1 |  | 0.22 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000694.1 |  | 0.20 | Saccharide | butirosin | Bacillus circulans
BGC0000246.1 |  | 0.19 | Polyketide | mithramycin | Streptomyces argillaceus
BGC0000721.1 |  | 0.18 | Saccharide | tobramycin | Streptoalloteichus tenebrarius
BGC0000760.1 |  | 0.18 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1 |  | 0.18 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000762.1 |  | 0.18 | Saccharide | exopolysaccharide | Rhizobium leguminosarum bv. viciae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001411.1 |  | 0.59 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0000720.1 |  | 0.58 | Saccharide | tobramycin | Streptoalloteichus tenebrarius
BGC0000836.1 |  | 0.56 | Other | APE Ec | Escherichia coli CFT073
BGC0002008.1 |  | 0.55 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000694.1 |  | 0.52 | Saccharide | butirosin | Bacillus circulans
BGC0000246.1 |  | 0.52 | Polyketide | mithramycin | Streptomyces argillaceus
BGC0000721.1 |  | 0.50 | Saccharide | tobramycin | Streptoalloteichus tenebrarius
BGC0000760.1 |  | 0.50 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1 |  | 0.50 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000762.1 |  | 0.49 | Saccharide | exopolysaccharide | Rhizobium leguminosarum bv. viciae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072255.1 - Region 3 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,767,975 - 2,785,907 nt. (total: 17,933 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001588.1 |  | 0.17 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b
BGC0001589.1 |  | 0.17 | Saccharide | exopolysaccharides | Burkholderia cenocepacia J2315
BGC0001120.1 |  | 0.16 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000899.1 |  | 0.15 | Other | desosamine | Streptomyces narbonensis
BGC0000898.1 |  | 0.15 | Saccharide | desosamine | Streptomyces venezuelae
BGC0001838.1 |  | 0.09 | NRP | WLIP | Pseudomonas putida
BGC0000045.1 |  | 0.08 | Polyketide | dehydrocurvularin | Aspergillus terreus
BGC0001657.1 |  | 0.08 | NRP | lysocin | Lysobacter sp. RH2180-5
BGC0002025.1 |  | 0.06 | NRP | thaxteramide C | Jahnella sp. MSr9139
BGC0001093.1 |  | 0.06 | NRP, Polyketide | disorazol A | Sorangium cellulosum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001588.1 |  | 0.48 | Saccharide | exopolysaccharides | Burkholderia pseudomallei 1026b
BGC0001589.1 |  | 0.48 | Saccharide | exopolysaccharides | Burkholderia cenocepacia J2315
BGC0001120.1 |  | 0.47 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000899.1 |  | 0.45 | Other | desosamine | Streptomyces narbonensis
BGC0000898.1 |  | 0.44 | Saccharide | desosamine | Streptomyces venezuelae
BGC0001838.1 |  | 0.34 | NRP | WLIP | Pseudomonas putida
BGC0000045.1 |  | 0.31 | Polyketide | dehydrocurvularin | Aspergillus terreus
BGC0001657.1 |  | 0.30 | NRP | lysocin | Lysobacter sp. RH2180-5
BGC0002025.1 |  | 0.26 | NRP | thaxteramide C | Jahnella sp. MSr9139
BGC0001093.1 |  | 0.24 | NRP, Polyketide | disorazol A | Sorangium cellulosum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP072255.1 - Region 4 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 4,767,860 - 4,788,126 nt. (total: 20,267 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.16 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001120.1 |  | 0.14 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001356.1 |  | 0.14 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0001138.1 |  | 0.14 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0000768.1 |  | 0.14 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0002009.1 |  | 0.14 | Polyketide | kanglemycin A, kanglemycin V1, kanglemycin V2 | Amycolatopsis vancoresmycina
BGC0000584.1 |  | 0.14 | RiPP | colicin V | Escherichia coli
BGC0000797.1 |  | 0.14 | Saccharide | sphingan polysaccharide | Sphingomonas sp. S88
BGC0001765.1 |  | 0.14 | Saccharide | salecan | Agrobacterium tumefaciens

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000486.1 |  | 0.47 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000554.1 |  | 0.46 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0001120.1 |  | 0.44 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001356.1 |  | 0.43 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0001138.1 |  | 0.43 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans
BGC0000768.1 |  | 0.43 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0002009.1 |  | 0.43 | Polyketide | kanglemycin A, kanglemycin V1, kanglemycin V2 | Amycolatopsis vancoresmycina
BGC0000584.1 |  | 0.43 | RiPP | colicin V | Escherichia coli
BGC0000797.1 |  | 0.43 | Saccharide | sphingan polysaccharide | Sphingomonas sp. S88
BGC0001765.1 |  | 0.43 | Saccharide | salecan | Agrobacterium tumefaciens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names