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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_AP019773.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene | 878,488 | 919,663 |
Region 2 | terpene | 938,092 | 958,952 |

NZ_AP019773.1 - Region 1 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 878,488 - 919,663 nt. (total: 41,176 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001897.1 |  | 0.19 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000272.1 |  | 0.19 | Polyketide | spore pigment | Streptomyces collinus
BGC0000248.1 |  | 0.17 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000234.1 |  | 0.17 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001197.1 |  | 0.17 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001366.1 |  | 0.17 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000231.1 |  | 0.17 | Polyketide | griseusin | Streptomyces griseus
BGC0000228.1 |  | 0.17 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001343.1 |  | 0.17 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000255.1 |  | 0.16 | Polyketide | pederin | Uncultured bacterium

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001897.1 |  | 0.52 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000272.1 |  | 0.51 | Polyketide | spore pigment | Streptomyces collinus
BGC0000248.1 |  | 0.49 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000234.1 |  | 0.48 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001197.1 |  | 0.48 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001366.1 |  | 0.48 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000231.1 |  | 0.48 | Polyketide | griseusin | Streptomyces griseus
BGC0000228.1 |  | 0.48 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0001343.1 |  | 0.48 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0000255.1 |  | 0.47 | Polyketide | pederin | Uncultured bacterium

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_AP019773.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 938,092 - 958,952 nt. (total: 20,861 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.15 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000698.1 |  | 0.14 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0001483.1 |  | 0.06 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0000889.1 |  | 0.06 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0002029.1 |  | 0.05 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.05 | Other | ferroverdin | Streptomyces lunaelactis
BGC0001555.1 |  | 0.03 | RiPP | colicin V | Escherichia coli chi7122

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.45 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000698.1 |  | 0.44 | Saccharide | hygromycin A | Streptomyces hygroscopicus
BGC0001483.1 |  | 0.26 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0000889.1 |  | 0.25 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0002029.1 |  | 0.23 | Other | bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C | Streptomyces lunaelactis
BGC0001592.1 |  | 0.23 | Other | ferroverdin | Streptomyces lunaelactis
BGC0001555.1 |  | 0.17 | RiPP | colicin V | Escherichia coli chi7122

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names