GCF_034479305.1_ASM3447930v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP140150.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	ectoine,lanthipeptide-class-iii	306,152	329,913	ectoine	Other	75%
Region 2	T3PKS	1,067,629	1,108,729
Region 3	siderophore	2,016,306	2,029,840
Region 4	lanthipeptide-class-i	3,751,625	3,776,132	chejuenolide A / chejuenolide B	Polyketide	7%

NZ_CP140150.1 - Region 1 - ectoine,lanthipeptide-class-iii

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Location: 306,152 - 329,913 nt. (total: 23,762 nt) Show pHMM detection rules used

ectoine: ectoine_synt
lanthipeptide-class-iii: (micKC and not PKS_KS)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000858.1	0.83	Other	ectoine	Methylobacter marinus
BGC0000853.1	0.81	Other	ectoine	Streptomyces anulatus
BGC0000855.1	0.80	Other	ectoine	Methylomicrobium kenyense
BGC0000852.1	0.78	Other	ectoine	Sporosarcina pasteurii
BGC0000859.1	0.67	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000856.1	0.66	Other	ectoine	Methylophaga thalassica
BGC0000857.1	0.61	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.52	Other	ectoine	Methylarcula marina
BGC0000854.1	0.51	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000501.1	0.32	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000858.1	0.73	Other	ectoine	Methylobacter marinus
BGC0000853.1	0.72	Other	ectoine	Streptomyces anulatus
BGC0000855.1	0.72	Other	ectoine	Methylomicrobium kenyense
BGC0000852.1	0.71	Other	ectoine	Sporosarcina pasteurii
BGC0000859.1	0.66	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000856.1	0.66	Other	ectoine	Methylophaga thalassica
BGC0000501.1	0.66	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000857.1	0.64	Other	ectoine	Methylophaga alcalica
BGC0000553.1	0.62	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000518.1	0.61	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736

Similar known gene clusters

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_310 - Putative Class III

ctg1_311 leader / core peptide: MNQVLELQKLSYNEESGQPAVD - KDhbPDhbDhbFDhbDhbDhbDhbDhbIDhbDhbLDhaDhbVDhaNNC
ctg1_312 leader / core peptide: MNQVLELQKLSYNEESGQPAVD - KDhbPDhbDhbFDhbDhbDhbDhbDhbIDhbDhbLDhaDhbVDhaQNC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

ctg1_311 - Class III

Cleavage pHMM score: 2.60

RODEO score: 0

Monoisotopic mass: 2098.1 Da

Molecular weight: 2099.3 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2117.3 Da N = 1; 2135.3 Da N = 2; 2153.4 Da N = 3; 2171.4 Da N = 4; 2189.4 Da N = 5; 2207.4 Da N = 6; 2225.4 Da N = 7; 2243.5 Da N = 8; 2261.5 Da N = 9; 2279.5 Da N = 10; 2297.5 Da N = 11; 2315.5 Da N = 12

ctg1_312 - Class III

Cleavage pHMM score: 2.60

RODEO score: 0

Monoisotopic mass: 2112.2 Da

Molecular weight: 2113.3 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2131.4 Da N = 1; 2149.4 Da N = 2; 2167.4 Da N = 3; 2185.4 Da N = 4; 2203.4 Da N = 5; 2221.5 Da N = 6; 2239.5 Da N = 7; 2257.5 Da N = 8; 2275.5 Da N = 9; 2293.5 Da N = 10; 2311.6 Da N = 11; 2329.6 Da N = 12

NZ_CP140150.1 - Region 2 - T3PKS

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Location: 1,067,629 - 1,108,729 nt. (total: 41,101 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.35	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001938.1	0.33	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001831.1	0.20	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000526.1	0.18	RiPP	macedocin	Streptococcus macedonicus
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001639.1	0.16	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001525.1	0.16	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.68	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001938.1	0.66	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001831.1	0.53	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000526.1	0.50	RiPP	macedocin	Streptococcus macedonicus
BGC0000496.1	0.47	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000519.1	0.47	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001639.1	0.47	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000501.1	0.47	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001525.1	0.47	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001407.1	0.47	RiPP	bicereucin	Bacillus cereus SJ1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP140150.1 - Region 3 - siderophore

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Location: 2,016,306 - 2,029,840 nt. (total: 13,535 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000942.1	0.48	Other	petrobactin	Bacillus anthracis str. Ames
BGC0001499.1	0.28	Other	aerobactin	Pantoea ananatis
BGC0000939.1	0.24	Other	aerobactin	Grimontia hollisae
BGC0001498.1	0.24	Other	aerobactin	Xenorhabdus szentirmaii DSM 16338
BGC0001555.1	0.20	RiPP	colicin V	Escherichia coli chi7122
BGC0000783.1	0.20	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0001514.1	0.18	Other	aristeromycin	Streptomyces citricolor
BGC0000886.1	0.17	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000774.1	0.14	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000457.1	0.14	NRP	vicibactin	Rhizobium etli CFN 42

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000942.1	0.77	Other	petrobactin	Bacillus anthracis str. Ames
BGC0001499.1	0.61	Other	aerobactin	Pantoea ananatis
BGC0000939.1	0.58	Other	aerobactin	Grimontia hollisae
BGC0001498.1	0.57	Other	aerobactin	Xenorhabdus szentirmaii DSM 16338
BGC0001555.1	0.52	RiPP	colicin V	Escherichia coli chi7122
BGC0000783.1	0.52	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0001514.1	0.49	Other	aristeromycin	Streptomyces citricolor
BGC0000886.1	0.48	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000774.1	0.44	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000457.1	0.44	NRP	vicibactin	Rhizobium etli CFN 42

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP140150.1 - Region 4 - lanthipeptide-class-i

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Location: 3,751,625 - 3,776,132 nt. (total: 24,508 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000543.1	0.28	RiPP	pep5	Staphylococcus epidermidis
BGC0000528.1	0.25	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001579.1	0.24	RiPP	duramycin	Streptomyces cinnamoneus
BGC0001618.1	0.23	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000508.1	0.23	RiPP	epidermin	Staphylococcus epidermidis
BGC0000509.1	0.22	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000503.1	0.22	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0001364.1	0.22	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919
BGC0001289.1	0.22	RiPP	penisin	Paenibacillus ehimensis
BGC0000554.1	0.21	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000543.1	0.62	RiPP	pep5	Staphylococcus epidermidis
BGC0000528.1	0.59	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0001579.1	0.58	RiPP	duramycin	Streptomyces cinnamoneus
BGC0001618.1	0.56	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000508.1	0.56	RiPP	epidermin	Staphylococcus epidermidis
BGC0000509.1	0.55	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000503.1	0.55	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0001364.1	0.54	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919
BGC0001289.1	0.54	RiPP	penisin	Paenibacillus ehimensis
BGC0000554.1	0.54	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998

Similar known gene clusters

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

No core peptides found.