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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP020405.2

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | RiPP-like | 1,589,758 | 1,600,681 |
Region 1.2 | LAP | 1,978,346 | 2,015,600 | nematophin | NRP | 12%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | RiPP-like | 1,589,758 | 1,600,681 |
Region 1.2 | LAP | 1,978,346 | 2,015,600 | nematophin | NRP | 12%

No secondary metabolite regions were found in these records:
  NZ_CP020404.1

Compact view
NZ_CP020405.2 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,589,758 - 1,600,681 nt. (total: 10,924 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000928.1 |  | 0.15 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.15 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000511.1 |  | 0.08 | RiPP | ericin S | Bacillus subtilis
BGC0001789.1 |  | 0.07 | RiPP | suicin 90-1330 | Streptococcus suis
BGC0000842.1 |  | 0.07 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0000537.1 |  | 0.07 | RiPP | nisin U | Streptococcus uberis
BGC0000536.1 |  | 0.07 | RiPP | nisin Q | Lactococcus lactis
BGC0000535.1 |  | 0.07 | RiPP | nisin A | Lactococcus lactis subsp. lactis
BGC0000549.1 |  | 0.06 | RiPP | salivaricin D | Streptococcus salivarius
BGC0000310.1 |  | 0.06 | NRP | bacitracin | Bacillus licheniformis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000928.1 |  | 0.45 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.45 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000511.1 |  | 0.30 | RiPP | ericin S | Bacillus subtilis
BGC0001789.1 |  | 0.28 | RiPP | suicin 90-1330 | Streptococcus suis
BGC0000842.1 |  | 0.28 | Other (Non-NRP beta-lactam) | carbapenem MM4550 | Streptomyces argenteolus
BGC0000537.1 |  | 0.28 | RiPP | nisin U | Streptococcus uberis
BGC0000536.1 |  | 0.28 | RiPP | nisin Q | Lactococcus lactis
BGC0000535.1 |  | 0.28 | RiPP | nisin A | Lactococcus lactis subsp. lactis
BGC0000549.1 |  | 0.26 | RiPP | salivaricin D | Streptococcus salivarius
BGC0000310.1 |  | 0.25 | NRP | bacitracin | Bacillus licheniformis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP020405.2 - Region 2 - LAP
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,978,346 - 2,015,600 nt. (total: 37,255 nt) Show pHMM detection rules used
LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | LAP | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001868.1 |  | 0.19 | Other (Phenazine) | iodinin | Xenorhabdus szentirmaii DSM 16338
BGC0001959.1 |  | 0.17 | Other | taylorflavin A, taylorflavin B | Streptomyces hiroshimensis
BGC0001973.1 |  | 0.17 | Other | fervenulin | Streptomyces hiroshimensis
BGC0001972.1 |  | 0.17 | Other | toxoflavin, fervenulin | Streptomyces hiroshimensis
BGC0000929.1 |  | 0.17 | Other | xanthothricin | Burkholderia glumae
BGC0000925.1 |  | 0.16 | Other | quinolobactin | Pseudomonas fluorescens
BGC0001285.1 |  | 0.16 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0000917.1 |  | 0.16 | Other | molybdenum cofactor | Rhodobacter capsulatus
BGC0000906.1 |  | 0.16 | Other | heme D1 | Heliophilum fasciatum
BGC0001517.1 |  | 0.15 | NRP | asperphenamate | Aspergillus terreus NIH2624

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001868.1 |  | 0.51 | Other (Phenazine) | iodinin | Xenorhabdus szentirmaii DSM 16338
BGC0001959.1 |  | 0.49 | Other | taylorflavin A, taylorflavin B | Streptomyces hiroshimensis
BGC0001973.1 |  | 0.49 | Other | fervenulin | Streptomyces hiroshimensis
BGC0001972.1 |  | 0.49 | Other | toxoflavin, fervenulin | Streptomyces hiroshimensis
BGC0000929.1 |  | 0.48 | Other | xanthothricin | Burkholderia glumae
BGC0000925.1 |  | 0.47 | Other | quinolobactin | Pseudomonas fluorescens
BGC0001285.1 |  | 0.47 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0000917.1 |  | 0.47 | Other | molybdenum cofactor | Rhodobacter capsulatus
BGC0000906.1 |  | 0.46 | Other | heme D1 | Heliophilum fasciatum
BGC0001517.1 |  | 0.46 | NRP | asperphenamate | Aspergillus terreus NIH2624

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names