Select genomic region:
Overview
10.1
13.1
14.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JNIX01000010 (original name was: NZ_JNIX01000010.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 10.1 | lassopeptide | 47,624 | 69,991 |

NZ_JNIX01000014 (original name was: NZ_JNIX01000014.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | resorcinol | 121,797 | 151,100 |

NZ_JNIX01000015 (original name was: NZ_JNIX01000015.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 14.1 | terpene | 101,786 | 125,383 | carotenoid | Terpene | 50%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 10.1 | lassopeptide | 47,624 | 69,991 |
Region 13.1 | resorcinol | 121,797 | 151,100 |
Region 14.1 | terpene | 101,786 | 125,383 | carotenoid | Terpene | 50%

No secondary metabolite regions were found in these records:
  NZ_JNIX01000001 (original name was: NZ_JNIX01000001.1)
  NZ_JNIX01000002 (original name was: NZ_JNIX01000002.1)
  NZ_JNIX01000003 (original name was: NZ_JNIX01000003.1)
  NZ_JNIX01000004 (original name was: NZ_JNIX01000004.1)
  NZ_JNIX01000005 (original name was: NZ_JNIX01000005.1)
  NZ_JNIX01000006 (original name was: NZ_JNIX01000006.1)
  NZ_JNIX01000007 (original name was: NZ_JNIX01000007.1)
  NZ_JNIX01000008 (original name was: NZ_JNIX01000008.1)
  NZ_JNIX01000009 (original name was: NZ_JNIX01000009.1)
  NZ_KL370782.1
  NZ_JNIX01000013 (original name was: NZ_JNIX01000013.1)
  NZ_JNIX01000016 (original name was: NZ_JNIX01000016.1)

Compact view
c00010_NZ_JNIX.. - Region 1 - lassopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 47,624 - 69,991 nt. (total: 22,368 nt) Show pHMM detection rules used
lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Lasso peptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | lassopeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000580.1 |  | 0.32 | RiPP | xanthomonin I, xanthomonin II | Xanthomonas gardneri ATCC 19865
BGC0000570.1 |  | 0.31 | RiPP | astexin-1 | Asticcacaulis excentricus CB 48
BGC0000574.1 |  | 0.26 | RiPP | caulosegnin I, caulosegnin II, caulosegnin III | Caulobacter segnis ATCC 21756
BGC0000573.1 |  | 0.24 | RiPP | caulonodin I, caulonodin II | Caulobacter sp. K31
BGC0000576.1 |  | 0.23 | RiPP | rubrivinodin | Rubrivivax gelatinosus IL144
BGC0000577.1 |  | 0.21 | RiPP | sphingonodin II | Sphingobium japonicum UT26S
BGC0001889.1 |  | 0.21 | RiPP | fusilassin | Thermobifida fusca YX
BGC0001673.1 |  | 0.20 | RiPP | moomysin | Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0001786.1 |  | 0.18 | RiPP | subterisin | Novosphingobium subterraneum
BGC0001539.1 |  | 0.18 | RiPP | cattlecin | Streptomyces cattleya NRRL 8057 = DSM 46488

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000580.1 |  | 0.65 | RiPP | xanthomonin I, xanthomonin II | Xanthomonas gardneri ATCC 19865
BGC0000570.1 |  | 0.65 | RiPP | astexin-1 | Asticcacaulis excentricus CB 48
BGC0000574.1 |  | 0.59 | RiPP | caulosegnin I, caulosegnin II, caulosegnin III | Caulobacter segnis ATCC 21756
BGC0000573.1 |  | 0.58 | RiPP | caulonodin I, caulonodin II | Caulobacter sp. K31
BGC0000576.1 |  | 0.56 | RiPP | rubrivinodin | Rubrivivax gelatinosus IL144
BGC0000577.1 |  | 0.54 | RiPP | sphingonodin II | Sphingobium japonicum UT26S
BGC0001889.1 |  | 0.53 | RiPP | fusilassin | Thermobifida fusca YX
BGC0001673.1 |  | 0.52 | RiPP | moomysin | Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0001786.1 |  | 0.50 | RiPP | subterisin | Novosphingobium subterraneum
BGC0001539.1 |  | 0.50 | RiPP | cattlecin | Streptomyces cattleya NRRL 8057 = DSM 46488

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lasso peptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lassopeptides - No core peptides found.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Lasso peptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of disulfide bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.
c00013_NZ_JNIX.. - Region 1 - resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 121,797 - 151,100 nt. (total: 29,304 nt) Show pHMM detection rules used
Region on contig edge.
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000703.1 |  | 0.20 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001526.1 |  | 0.19 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000792.1 |  | 0.17 | Saccharide | polysaccharide | Enterococcus faecalis OG1RF
BGC0001839.1 |  | 0.16 | Terpene | squalestatin S1 | Aspergillus sp. Z5
BGC0001765.1 |  | 0.15 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.15 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0001525.1 |  | 0.15 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0001521.1 |  | 0.14 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000393.1 |  | 0.12 | NRP, Polyketide | myxoprincomide-c506 | Myxococcus xanthus DK 1622
BGC0002004.1 |  | 0.12 | RiPP | methanobactin | Methylosinus trichosporium OB3b

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000703.1 |  | 0.52 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0001526.1 |  | 0.50 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000792.1 |  | 0.47 | Saccharide | polysaccharide | Enterococcus faecalis OG1RF
BGC0001839.1 |  | 0.47 | Terpene | squalestatin S1 | Aspergillus sp. Z5
BGC0001765.1 |  | 0.45 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.45 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0001525.1 |  | 0.45 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0001521.1 |  | 0.44 | NRP | auriculamide | Herpetosiphon aurantiacus DSM 785
BGC0000393.1 |  | 0.41 | NRP, Polyketide | myxoprincomide-c506 | Myxococcus xanthus DK 1622
BGC0002004.1 |  | 0.40 | RiPP | methanobactin | Methylosinus trichosporium OB3b

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00014_NZ_JNIX.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 101,786 - 125,383 nt. (total: 23,598 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000656.1 |  | 0.54 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000647.1 |  | 0.49 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000630.1 |  | 0.38 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000650.1 |  | 0.35 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000639.1 |  | 0.31 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000641.1 |  | 0.31 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416
BGC0000638.1 |  | 0.31 | Terpene | carotenoid | Pantoea ananatis
BGC0000640.1 |  | 0.30 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000635.1 |  | 0.30 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0000664.1 |  | 0.25 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000656.1 |  | 0.81 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000647.1 |  | 0.78 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000630.1 |  | 0.70 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000650.1 |  | 0.68 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000639.1 |  | 0.65 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000641.1 |  | 0.65 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416
BGC0000638.1 |  | 0.64 | Terpene | carotenoid | Pantoea ananatis
BGC0000640.1 |  | 0.64 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000635.1 |  | 0.63 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0000664.1 |  | 0.58 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names