GCF_900636915.1_45532_F02_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_LR134327.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	arylpolyene,resorcinol	201,135	267,152	aryl polyenes	Other	27%
Region 2	thiopeptide	590,187	628,118	colicin V	RiPP	2%
Region 3	RiPP-like	1,743,660	1,754,580

NZ_LR134327.1 - Region 1 - arylpolyene,resorcinol

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Location: 201,135 - 267,152 nt. (total: 66,018 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)
resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002008.1	0.62	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0001475.1	0.50	Polyketide	aspterric acid	Aspergillus terreus NIH2624
BGC0001526.1	0.49	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.47	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001895.1	0.46	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0001197.1	0.45	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000234.1	0.45	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0002000.1	0.45	Polyketide	setomimycin	Streptomyces aurantiacus JA 4570
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000836.1	0.44	Other	APE Ec	Escherichia coli CFT073

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001895.1	0.59	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0002008.1	0.58	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0001343.1	0.57	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0002000.1	0.57	Polyketide	setomimycin	Streptomyces aurantiacus JA 4570
BGC0000836.1	0.57	Other	APE Ec	Escherichia coli CFT073
BGC0001890.1	0.57	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0001904.1	0.56	Polyketide	fluostatin	Micromonospora rosaria
BGC0001197.1	0.56	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0001465.1	0.56	Other	bromopyrroles/bromophenols	Marinomonas mediterranea MMB-1
BGC0000234.1	0.55	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_LR134327.1 - Region 2 - thiopeptide

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Location: 590,187 - 628,118 nt. (total: 37,932 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.17	Other	nucleocidin	Streptomyces calvus
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0001525.1	0.16	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000517.1	0.16	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000572.1	0.16	RiPP	capistruin	Burkholderia thailandensis E444
BGC0001407.1	0.16	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000541.1	0.15	RiPP	paenicidin A	Paenibacillus polymyxa

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.48	Other	nucleocidin	Streptomyces calvus
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans
BGC0001525.1	0.46	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000517.1	0.46	RiPP	haloduracin β, haloduracin α	Bacillus halodurans C-125
BGC0001526.1	0.46	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000572.1	0.46	RiPP	capistruin	Burkholderia thailandensis E444
BGC0001407.1	0.46	RiPP	bicereucin	Bacillus cereus SJ1
BGC0000541.1	0.46	RiPP	paenicidin A	Paenibacillus polymyxa

Similar known gene clusters

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Thiopeptides

Core peptide predictions

No core peptides found.

NZ_LR134327.1 - Region 3 - RiPP-like

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Location: 1,743,660 - 1,754,580 nt. (total: 10,921 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000925.1	0.16	Other	quinolobactin	Pseudomonas fluorescens
BGC0000812.1	0.14	Alkaloid	huperzine A	Shiraia sp. slf14
BGC0000916.1	0.14	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001650.1	0.04	NRP	Le-pyrrolopyrazines	Lysobacter enzymogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000925.1	0.47	Other	quinolobactin	Pseudomonas fluorescens
BGC0000812.1	0.44	Alkaloid	huperzine A	Shiraia sp. slf14
BGC0000916.1	0.43	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001650.1	0.20	NRP	Le-pyrrolopyrazines	Lysobacter enzymogenes

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names