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Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NC_010519.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | RiPP-like | 1,191,231 | 1,202,151 |
Region 2 | arylpolyene | 2,218,116 | 2,261,826 | APE Vf | Other | 25%

NC_010519.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,191,231 - 1,202,151 nt. (total: 10,921 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001610.1 |  | 0.14 | Other | gougerotin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0001476.1 |  | 0.06 | Other (Nucleoside) | pseudouridimycin | Streptomyces sp.
BGC0001650.1 |  | 0.04 | NRP | Le-pyrrolopyrazines | Lysobacter enzymogenes
BGC0001215.1 |  | 0.03 | NRP | conglobatin | Streptomyces conglobatus
BGC0000433.1 |  | 0.03 | NRP | surfactin | Bacillus velezensis FZB42

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001610.1 |  | 0.43 | Other | gougerotin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0001476.1 |  | 0.27 | Other (Nucleoside) | pseudouridimycin | Streptomyces sp.
BGC0001650.1 |  | 0.20 | NRP | Le-pyrrolopyrazines | Lysobacter enzymogenes
BGC0001215.1 |  | 0.17 | NRP | conglobatin | Streptomyces conglobatus
BGC0000433.1 |  | 0.15 | NRP | surfactin | Bacillus velezensis FZB42

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_010519.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,218,116 - 2,261,826 nt. (total: 43,711 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001197.1 |  | 0.23 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0002008.1 |  | 0.22 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000272.1 |  | 0.21 | Polyketide | spore pigment | Streptomyces collinus
BGC0000261.1 |  | 0.21 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0000837.1 |  | 0.21 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0000873.1 |  | 0.21 | Other | A-201A | Saccharothrix mutabilis subsp. capreolus
BGC0000194.1 |  | 0.21 | Polyketide | actinorhodin | Streptomyces coelicolor A3(2)
BGC0001895.1 |  | 0.20 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000836.1 |  | 0.20 | Other | APE Ec | Escherichia coli CFT073
BGC0000219.1 |  | 0.20 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001197.1 |  | 0.56 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0002008.1 |  | 0.55 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000272.1 |  | 0.54 | Polyketide | spore pigment | Streptomyces collinus
BGC0000261.1 |  | 0.53 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0000837.1 |  | 0.53 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0000873.1 |  | 0.53 | Other | A-201A | Saccharothrix mutabilis subsp. capreolus
BGC0000194.1 |  | 0.53 | Polyketide | actinorhodin | Streptomyces coelicolor A3(2)
BGC0001895.1 |  | 0.53 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001
BGC0000836.1 |  | 0.53 | Other | APE Ec | Escherichia coli CFT073
BGC0000219.1 |  | 0.52 | Polyketide, Saccharide | elloramycin | Streptomyces olivaceus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names