Select genomic region:
Overview
24.1
54.1
93.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LUHG01000078 (original name was: NZ_LUHG01000078.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 24.1 | terpene | 26,647 | 51,009 | carotenoid | Terpene | 42%

NZ_LUHG01000024 (original name was: NZ_LUHG01000024.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 54.1 | T3PKS | 1 | 21,372 |

NZ_LUHG01000061 (original name was: NZ_LUHG01000061.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 93.1 | RiPP-like | 32,290 | 43,120 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 24.1 | terpene | 26,647 | 51,009 | carotenoid | Terpene | 42%
Region 54.1 | T3PKS | 1 | 21,372 |
Region 93.1 | RiPP-like | 32,290 | 43,120 |

No secondary metabolite regions were found in these records:
  NZ_LUHG01000056 (original name was: NZ_LUHG01000056.1)
  NZ_LUHG01000067 (original name was: NZ_LUHG01000067.1)
  NZ_LUHG01000059 (original name was: NZ_LUHG01000059.1)
  NZ_LUHG01000022 (original name was: NZ_LUHG01000022.1)
  NZ_LUHG01000019 (original name was: NZ_LUHG01000019.1)
  NZ_LUHG01000089 (original name was: NZ_LUHG01000089.1)
  NZ_LUHG01000039 (original name was: NZ_LUHG01000039.1)
  NZ_LUHG01000097 (original name was: NZ_LUHG01000097.1)
  NZ_LUHG01000093 (original name was: NZ_LUHG01000093.1)
  NZ_LUHG01000047 (original name was: NZ_LUHG01000047.1)
  NZ_LUHG01000003 (original name was: NZ_LUHG01000003.1)
  NZ_LUHG01000113 (original name was: NZ_LUHG01000113.1)
  NZ_LUHG01000107 (original name was: NZ_LUHG01000107.1)
  NZ_LUHG01000013 (original name was: NZ_LUHG01000013.1)
  NZ_LUHG01000115 (original name was: NZ_LUHG01000115.1)
  NZ_LUHG01000116 (original name was: NZ_LUHG01000116.1)
  NZ_LUHG01000066 (original name was: NZ_LUHG01000066.1)
  NZ_LUHG01000002 (original name was: NZ_LUHG01000002.1)
  NZ_LUHG01000070 (original name was: NZ_LUHG01000070.1)
  NZ_LUHG01000049 (original name was: NZ_LUHG01000049.1)
  NZ_LUHG01000051 (original name was: NZ_LUHG01000051.1)
  NZ_LUHG01000096 (original name was: NZ_LUHG01000096.1)
  NZ_LUHG01000084 (original name was: NZ_LUHG01000084.1)
  NZ_LUHG01000100 (original name was: NZ_LUHG01000100.1)
  NZ_LUHG01000018 (original name was: NZ_LUHG01000018.1)
  NZ_LUHG01000102 (original name was: NZ_LUHG01000102.1)
  NZ_LUHG01000099 (original name was: NZ_LUHG01000099.1)
  NZ_LUHG01000029 (original name was: NZ_LUHG01000029.1)
  NZ_LUHG01000001 (original name was: NZ_LUHG01000001.1)
  NZ_LUHG01000052 (original name was: NZ_LUHG01000052.1)
  NZ_LUHG01000075 (original name was: NZ_LUHG01000075.1)
  NZ_LUHG01000094 (original name was: NZ_LUHG01000094.1)
  NZ_LUHG01000026 (original name was: NZ_LUHG01000026.1)
  NZ_LUHG01000109 (original name was: NZ_LUHG01000109.1)
  NZ_LUHG01000036 (original name was: NZ_LUHG01000036.1)
  NZ_LUHG01000112 (original name was: NZ_LUHG01000112.1)
  NZ_LUHG01000076 (original name was: NZ_LUHG01000076.1)
  NZ_LUHG01000110 (original name was: NZ_LUHG01000110.1)
  NZ_LUHG01000072 (original name was: NZ_LUHG01000072.1)
  NZ_LUHG01000081 (original name was: NZ_LUHG01000081.1)
  NZ_LUHG01000082 (original name was: NZ_LUHG01000082.1)
  NZ_LUHG01000037 (original name was: NZ_LUHG01000037.1)
  NZ_LUHG01000014 (original name was: NZ_LUHG01000014.1)
  NZ_LUHG01000086 (original name was: NZ_LUHG01000086.1)
  NZ_LUHG01000098 (original name was: NZ_LUHG01000098.1)
  NZ_LUHG01000057 (original name was: NZ_LUHG01000057.1)
  NZ_LUHG01000088 (original name was: NZ_LUHG01000088.1)
  NZ_LUHG01000105 (original name was: NZ_LUHG01000105.1)
  NZ_LUHG01000058 (original name was: NZ_LUHG01000058.1)
  NZ_LUHG01000101 (original name was: NZ_LUHG01000101.1)
  NZ_LUHG01000038 (original name was: NZ_LUHG01000038.1)
  NZ_LUHG01000077 (original name was: NZ_LUHG01000077.1)
  NZ_LUHG01000087 (original name was: NZ_LUHG01000087.1)
  NZ_LUHG01000017 (original name was: NZ_LUHG01000017.1)
  NZ_LUHG01000016 (original name was: NZ_LUHG01000016.1)
  NZ_LUHG01000092 (original name was: NZ_LUHG01000092.1)
  NZ_LUHG01000040 (original name was: NZ_LUHG01000040.1)
  NZ_LUHG01000055 (original name was: NZ_LUHG01000055.1)
  NZ_LUHG01000106 (original name was: NZ_LUHG01000106.1)
  NZ_LUHG01000046 (original name was: NZ_LUHG01000046.1)
  NZ_LUHG01000073 (original name was: NZ_LUHG01000073.1)
  NZ_LUHG01000054 (original name was: NZ_LUHG01000054.1)
  NZ_LUHG01000045 (original name was: NZ_LUHG01000045.1)
  NZ_LUHG01000083 (original name was: NZ_LUHG01000083.1)
  NZ_LUHG01000032 (original name was: NZ_LUHG01000032.1)
  NZ_LUHG01000028 (original name was: NZ_LUHG01000028.1)
  NZ_LUHG01000091 (original name was: NZ_LUHG01000091.1)
  NZ_LUHG01000065 (original name was: NZ_LUHG01000065.1)
  NZ_LUHG01000069 (original name was: NZ_LUHG01000069.1)
  NZ_LUHG01000074 (original name was: NZ_LUHG01000074.1)
  NZ_LUHG01000071 (original name was: NZ_LUHG01000071.1)
  NZ_LUHG01000062 (original name was: NZ_LUHG01000062.1)
  NZ_LUHG01000030 (original name was: NZ_LUHG01000030.1)
  NZ_LUHG01000108 (original name was: NZ_LUHG01000108.1)
  NZ_LUHG01000006 (original name was: NZ_LUHG01000006.1)
  NZ_LUHG01000023 (original name was: NZ_LUHG01000023.1)
  NZ_LUHG01000095 (original name was: NZ_LUHG01000095.1)
  NZ_LUHG01000064 (original name was: NZ_LUHG01000064.1)
  NZ_LUHG01000035 (original name was: NZ_LUHG01000035.1)
  NZ_LUHG01000090 (original name was: NZ_LUHG01000090.1)
  NZ_LUHG01000053 (original name was: NZ_LUHG01000053.1)
  NZ_LUHG01000103 (original name was: NZ_LUHG01000103.1)
  NZ_LUHG01000034 (original name was: NZ_LUHG01000034.1)
  NZ_LUHG01000104 (original name was: NZ_LUHG01000104.1)
  NZ_LUHG01000020 (original name was: NZ_LUHG01000020.1)
  NZ_LUHG01000041 (original name was: NZ_LUHG01000041.1)
  NZ_LUHG01000080 (original name was: NZ_LUHG01000080.1)
  NZ_LUHG01000050 (original name was: NZ_LUHG01000050.1)
  NZ_LUHG01000042 (original name was: NZ_LUHG01000042.1)
  NZ_LUHG01000044 (original name was: NZ_LUHG01000044.1)
  NZ_LUHG01000033 (original name was: NZ_LUHG01000033.1)
  NZ_LUHG01000111 (original name was: NZ_LUHG01000111.1)
  NZ_LUHG01000085 (original name was: NZ_LUHG01000085.1)
  NZ_LUHG01000012 (original name was: NZ_LUHG01000012.1)
  NZ_LUHG01000068 (original name was: NZ_LUHG01000068.1)

Compact view
c00024_NZ_LUHG.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 26,647 - 51,009 nt. (total: 24,363 nt) Show pHMM detection rules used
Region on contig edge.
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000646.1 |  | 0.32 | Terpene | β-carotein | uncultured bacterium
BGC0000630.1 |  | 0.31 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000650.1 |  | 0.31 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000634.1 |  | 0.31 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.31 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000813.1 |  | 0.26 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000635.1 |  | 0.26 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0001903.1 |  | 0.22 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0000772.1 |  | 0.22 | Saccharide | lipopolysaccharide | Brucella melitensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.66 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000646.1 |  | 0.65 | Terpene | β-carotein | uncultured bacterium
BGC0000630.1 |  | 0.65 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000650.1 |  | 0.65 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000634.1 |  | 0.64 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.64 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000813.1 |  | 0.59 | Alkaloid | K-252a | Nonomuraea longicatena
BGC0000635.1 |  | 0.59 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0001903.1 |  | 0.55 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0000772.1 |  | 0.55 | Saccharide | lipopolysaccharide | Brucella melitensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00054_NZ_LUHG.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 21,372 nt. (total: 21,372 nt) Show pHMM detection rules used
Region on contig edge.
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001938.1 |  | 0.47 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001962.1 |  | 0.34 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001077.1 |  | 0.17 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001831.1 |  | 0.17 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000758.1 |  | 0.15 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000528.1 |  | 0.12 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0002034.1 |  | 0.09 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6
BGC0000679.1 |  | 0.09 | Terpene | diazepinomicin | Micromonospora sp. M42
BGC0001148.1 |  | 0.08 | NRP, RiPP | pheganomycin | Streptomyces cirratus
BGC0001848.1 |  | 0.08 | Other | diazaquinomycin H, diazaquinomycin J | Micromonospora sp. B006

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001938.1 |  | 0.76 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0001962.1 |  | 0.67 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001077.1 |  | 0.49 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0001831.1 |  | 0.48 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000758.1 |  | 0.45 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000528.1 |  | 0.40 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0002034.1 |  | 0.34 | Other | perquinoline A, perquinoline B, perquinoline C | Streptomyces sp. IB2014 016-6
BGC0000679.1 |  | 0.33 | Terpene | diazepinomicin | Micromonospora sp. M42
BGC0001148.1 |  | 0.31 | NRP, RiPP | pheganomycin | Streptomyces cirratus
BGC0001848.1 |  | 0.31 | Other | diazaquinomycin H, diazaquinomycin J | Micromonospora sp. B006

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00093_NZ_LUHG.. - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 32,290 - 43,120 nt. (total: 10,831 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001650.1 |  | 0.05 | NRP | Le-pyrrolopyrazines | Lysobacter enzymogenes

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001650.1 |  | 0.23 | NRP | Le-pyrrolopyrazines | Lysobacter enzymogenes

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names