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Overview
2.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP072889.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | cyclic-lactone-autoinducer | 367,561 | 388,169 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | cyclic-lactone-autoinducer | 367,561 | 388,169 |

No secondary metabolite regions were found in these records:
  NZ_CP072888.1
  NZ_CP072890.1

Compact view
NZ_CP072889.1 - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 367,561 - 388,169 nt. (total: 20,609 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000765.1 |  | 0.22 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000767.1 |  | 0.22 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000766.1 |  | 0.22 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000803.1 |  | 0.22 | Saccharide | GG exopolysaccharide | Lactobacillus rhamnosus GG
BGC0001410.1 |  | 0.20 | Saccharide | polysaccharide A | Bacteroides fragilis
BGC0000787.1 |  | 0.15 | Saccharide | O-antigen | Escherichia coli
BGC0000770.1 |  | 0.14 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0001291.1 |  | 0.13 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000540.1 |  | 0.10 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0000636.1 |  | 0.10 | Terpene | carotenoid | Brevibacterium linens

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000765.1 |  | 0.55 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000767.1 |  | 0.55 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000766.1 |  | 0.55 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000803.1 |  | 0.55 | Saccharide | GG exopolysaccharide | Lactobacillus rhamnosus GG
BGC0001410.1 |  | 0.53 | Saccharide | polysaccharide A | Bacteroides fragilis
BGC0000787.1 |  | 0.45 | Saccharide | O-antigen | Escherichia coli
BGC0000770.1 |  | 0.44 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0001291.1 |  | 0.42 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000540.1 |  | 0.36 | RiPP | paenibacillin | Paenibacillus polymyxa OSY-DF
BGC0000636.1 |  | 0.36 | Terpene | carotenoid | Brevibacterium linens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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