Select genomic region:
Overview
1.1
1.2

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP068061.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | cyclic-lactone-autoinducer | 1,474,042 | 1,494,754 |
Region 1.2 | T3PKS,siderophore | 2,101,056 | 2,142,225 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | cyclic-lactone-autoinducer | 1,474,042 | 1,494,754 |
Region 1.2 | T3PKS,siderophore | 2,101,056 | 2,142,225 |

No secondary metabolite regions were found in these records:
  NZ_CP068062.1

Compact view
NZ_CP068061.1 - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,474,042 - 1,494,754 nt. (total: 20,713 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.23 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000488.1 |  | 0.18 | RiPP | circularin A | Clostridium beijerinckii
BGC0000560.1 |  | 0.16 | RiPP | subtilomycin | Bacillus subtilis
BGC0000494.1 |  | 0.16 | RiPP | uberolysin | Streptococcus uberis
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000500.1 |  | 0.16 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000543.1 |  | 0.16 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000509.1 |  | 0.16 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0001494.1 |  | 0.16 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.1 |  | 0.56 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000488.1 |  | 0.49 | RiPP | circularin A | Clostridium beijerinckii
BGC0000560.1 |  | 0.47 | RiPP | subtilomycin | Bacillus subtilis
BGC0000494.1 |  | 0.47 | RiPP | uberolysin | Streptococcus uberis
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000500.1 |  | 0.47 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000504.1 |  | 0.47 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000543.1 |  | 0.47 | RiPP | pep5 | Staphylococcus epidermidis
BGC0000509.1 |  | 0.47 | RiPP | epilancin 15x | Staphylococcus epidermidis
BGC0001494.1 |  | 0.47 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP068061.1 - Region 2 - T3PKS,siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,101,056 - 2,142,225 nt. (total: 41,170 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000946.1 |  |  | 0.69 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0001408.1 |  |  | 0.67 | Other | xanthoferrin | Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000947.1 |  |  | 0.50 | Other | vibrioferrin | Vibrio alginolyticus
BGC0001870.1 |  |  | 0.49 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000944.1 |  |  | 0.43 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000939.1 |  |  | 0.32 | Other | aerobactin | Grimontia hollisae
BGC0000943.1 |  |  | 0.32 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1 |  |  | 0.28 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000286.1 |  |  | 0.22 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000205.1 |  |  | 0.21 | Polyketide | bryostatin | Candidatus Endobugula sertula

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000946.1 |  | 0.68 | Other | vibrioferrin | Vibrio parahaemolyticus
BGC0001408.1 |  | 0.67 | Other | xanthoferrin | Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000939.1 |  | 0.66 | Other | aerobactin | Grimontia hollisae
BGC0000286.1 |  | 0.55 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0000947.1 |  | 0.55 | Other | vibrioferrin | Vibrio alginolyticus
BGC0000944.1 |  | 0.54 | Other (Non-NRP siderophore) | staphyloferrin A | Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1 |  | 0.54 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000205.1 |  | 0.54 | Polyketide | bryostatin | Candidatus Endobugula sertula
BGC0001197.1 |  | 0.51 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000218.1 |  | 0.50 | Polyketide | doxorubicin | Streptomyces peucetius

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names