Select genomic region:
Overview
1.1
1.2
1.3
1.4
1.5
1.6
2.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP014056.2

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 320,048 | 342,183 | pseudaminic acid | Other | 33%
Region 1.2 | RiPP-like | 1,365,894 | 1,376,745 |
Region 1.3 | redox-cofactor | 1,606,499 | 1,628,650 | lankacidin C | NRP + Polyketide | 13%
Region 1.4 | betalactone | 1,686,581 | 1,716,589 |
Region 1.5 | thiopeptide | 2,158,156 | 2,185,247 |
Region 1.6 | siderophore | 2,787,414 | 2,801,940 | aerobactin | Other | 88%

NZ_CP014055.2

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | ectoine | 188,164 | 198,550 | ectoine | Other | 66%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | betalactone | 320,048 | 342,183 | pseudaminic acid | Other | 33%
Region 1.2 | RiPP-like | 1,365,894 | 1,376,745 |
Region 1.3 | redox-cofactor | 1,606,499 | 1,628,650 | lankacidin C | NRP + Polyketide | 13%
Region 1.4 | betalactone | 1,686,581 | 1,716,589 |
Region 1.5 | thiopeptide | 2,158,156 | 2,185,247 |
Region 1.6 | siderophore | 2,787,414 | 2,801,940 | aerobactin | Other | 88%
Region 2.1 | ectoine | 188,164 | 198,550 | ectoine | Other | 66%

Compact view
NZ_CP014056.2 - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 320,048 - 342,183 nt. (total: 22,136 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001411.1 |  | 0.16 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0001586.1 |  | 0.15 | Saccharide | EPS273 | Pseudomonas stutzeri
BGC0000758.1 |  | 0.15 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000785.1 |  | 0.14 | Saccharide | O-antigen | Burkholderia mallei
BGC0000782.1 |  | 0.14 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000789.1 |  | 0.14 | Saccharide | O-antigen | Escherichia coli
BGC0000770.1 |  | 0.14 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0000781.1 |  | 0.14 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001947.1 |  | 0.14 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000928.1 |  | 0.14 | Other | T3 toxin | Cylindrospermopsis raciborskii T3

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001411.1 |  | 0.47 | Saccharide | polysaccharide B | Bacteroides fragilis
BGC0001586.1 |  | 0.46 | Saccharide | EPS273 | Pseudomonas stutzeri
BGC0000758.1 |  | 0.45 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000785.1 |  | 0.44 | Saccharide | O-antigen | Burkholderia mallei
BGC0000782.1 |  | 0.44 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b
BGC0000789.1 |  | 0.44 | Saccharide | O-antigen | Escherichia coli
BGC0000770.1 |  | 0.44 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0000781.1 |  | 0.44 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0001947.1 |  | 0.43 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000928.1 |  | 0.43 | Other | T3 toxin | Cylindrospermopsis raciborskii T3

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP014056.2 - Region 2 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,365,894 - 1,376,745 nt. (total: 10,852 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002004.1 |  | 0.19 | RiPP | methanobactin | Methylosinus trichosporium OB3b
BGC0000896.1 |  | 0.16 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0001733.1 |  | 0.06 | RiPP | PcpA | Pleurocapsa sp. PCC 7327
BGC0001133.1 |  | 0.05 | NRP | taxlllaid A | Xenorhabdus bovienii SS-2004

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002004.1 |  | 0.51 | RiPP | methanobactin | Methylosinus trichosporium OB3b
BGC0000896.1 |  | 0.47 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0001733.1 |  | 0.24 | RiPP | PcpA | Pleurocapsa sp. PCC 7327
BGC0001133.1 |  | 0.22 | NRP | taxlllaid A | Xenorhabdus bovienii SS-2004

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP014056.2 - Region 3 - redox-cofactor
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,606,499 - 1,628,650 nt. (total: 22,152 nt) Show pHMM detection rules used
redox-cofactor: (cds(PF04055 and (TIGR04085 or SPASM)) and (TIGR02111 or TIGR03966) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | redox-cofactor | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.16 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001925.1 |  | 0.14 | Alkaloid | altemicidin, SB-203207, SB-203208 | Streptomyces sp.
BGC0000903.1 |  | 0.14 | Other | fluorometabolite | Streptomyces cattleya
BGC0000906.1 |  | 0.13 | Other | heme D1 | Heliophilum fasciatum
BGC0000905.1 |  | 0.13 | Other | heme D1 | Heliobacillus mobilis
BGC0000043.1 |  | 0.11 | Polyketide | curacin A | Moorea producens 19L
BGC0001057.1 |  | 0.10 | NRP, Polyketide | zearalenone | Fusarium graminearum
BGC0002007.1 |  | 0.10 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0001923.1 |  | 0.09 | Terpene, Polyketide | ascochlorin | Acremonium egyptiacum
BGC0000874.1 |  | 0.09 | Other | blasticidin S | Streptomyces griseochromogenes

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.46 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0001925.1 |  | 0.44 | Alkaloid | altemicidin, SB-203207, SB-203208 | Streptomyces sp.
BGC0000903.1 |  | 0.43 | Other | fluorometabolite | Streptomyces cattleya
BGC0000906.1 |  | 0.41 | Other | heme D1 | Heliophilum fasciatum
BGC0000905.1 |  | 0.41 | Other | heme D1 | Heliobacillus mobilis
BGC0000043.1 |  | 0.37 | Polyketide | curacin A | Moorea producens 19L
BGC0001057.1 |  | 0.36 | NRP, Polyketide | zearalenone | Fusarium graminearum
BGC0002007.1 |  | 0.36 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0001923.1 |  | 0.34 | Terpene, Polyketide | ascochlorin | Acremonium egyptiacum
BGC0000874.1 |  | 0.34 | Other | blasticidin S | Streptomyces griseochromogenes

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP014056.2 - Region 4 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,686,581 - 1,716,589 nt. (total: 30,009 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001859.1 |  | 0.24 | Other (Phosphonate) | fosfomycin | Pseudomonas syringae
BGC0000904.1 |  | 0.21 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000938.1 |  | 0.20 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000410.1 |  | 0.17 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0001441.1 |  | 0.17 | Other | belactosin A, belactosin C | Streptomyces sp.
BGC0000554.1 |  | 0.17 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000544.1 |  | 0.16 | RiPP | planosporicin | Planomonospora alba
BGC0001525.1 |  | 0.16 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000519.1 |  | 0.16 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000571.1 |  | 0.16 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001859.1 |  | 0.57 | Other (Phosphonate) | fosfomycin | Pseudomonas syringae
BGC0000904.1 |  | 0.53 | Other | FR-900098 | Streptomyces rubellomurinus
BGC0000938.1 |  | 0.52 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000410.1 |  | 0.48 | NRP | pseudomonine | Pseudomonas fluorescens
BGC0001441.1 |  | 0.48 | Other | belactosin A, belactosin C | Streptomyces sp.
BGC0000554.1 |  | 0.48 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000544.1 |  | 0.47 | RiPP | planosporicin | Planomonospora alba
BGC0001525.1 |  | 0.47 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0000519.1 |  | 0.47 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000571.1 |  | 0.47 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP014056.2 - Region 5 - thiopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,158,156 - 2,185,247 nt. (total: 27,092 nt) Show pHMM detection rules used
thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Thiopeptides
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | thiopeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000938.1 |  | 0.20 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000488.1 |  | 0.17 | RiPP | circularin A | Clostridium beijerinckii
BGC0000487.1 |  | 0.16 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0001285.1 |  | 0.16 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0000513.1 |  | 0.15 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000565.1 |  | 0.15 | RiPP | goadsporin | Streptomyces sp. TP-A0584
BGC0001120.1 |  | 0.15 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000703.1 |  | 0.14 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000932.1 |  | 0.14 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395
BGC0001362.1 |  | 0.14 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000938.1 |  | 0.52 | Other (Aminocoumarin) | fosfomycin | Streptomyces fradiae
BGC0000488.1 |  | 0.48 | RiPP | circularin A | Clostridium beijerinckii
BGC0000487.1 |  | 0.47 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0001285.1 |  | 0.47 | Other (Fatty acid) | pseudopyronine A, pseudopyronine B | Pseudomonas putida
BGC0000513.1 |  | 0.46 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000565.1 |  | 0.45 | RiPP | goadsporin | Streptomyces sp. TP-A0584
BGC0001120.1 |  | 0.44 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000703.1 |  | 0.44 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000932.1 |  | 0.44 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395
BGC0001362.1 |  | 0.44 | Other | tropodithietic acid | Phaeobacter inhibens DSM 17395

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Thiopeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash. Predicted tail sequences are also shown.
No core peptides found.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
Thiopeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists its possible molecular weights and the scores for cleavage site prediction and RODEO. If relevant, other features, such as macrocycle and amidation, will also be listed.
No core peptides found.
NZ_CP014056.2 - Region 6 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,787,414 - 2,801,940 nt. (total: 14,527 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000939.1 |  | 0.72 | Other | aerobactin | Grimontia hollisae
BGC0001499.1 |  | 0.39 | Other | aerobactin | Pantoea ananatis
BGC0001713.1 |  | 0.30 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001572.1 |  | 0.29 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000940.1 |  | 0.29 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001453.1 |  | 0.29 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001531.1 |  | 0.29 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000941.1 |  | 0.28 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001498.1 |  | 0.27 | Other | aerobactin | Xenorhabdus szentirmaii DSM 16338
BGC0001478.1 |  | 0.22 | Other | desferrioxamine E | Streptomyces sp. ID38640

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000939.1 |  | 0.90 | Other | aerobactin | Grimontia hollisae
BGC0001499.1 |  | 0.71 | Other | aerobactin | Pantoea ananatis
BGC0001713.1 |  | 0.64 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001572.1 |  | 0.63 | Other | desferrioxamine E | Pantoea agglomerans
BGC0000940.1 |  | 0.62 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001453.1 |  | 0.62 | Other | desferrioxamine | Streptomyces argillaceus
BGC0001531.1 |  | 0.62 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000941.1 |  | 0.61 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001498.1 |  | 0.61 | Other | aerobactin | Xenorhabdus szentirmaii DSM 16338
BGC0001478.1 |  | 0.54 | Other | desferrioxamine E | Streptomyces sp. ID38640

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
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NZ_CP014055.2 - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
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Location: 188,164 - 198,550 nt. (total: 10,387 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000859.1 |  | 0.53 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.52 | Other | ectoine | Methylophaga thalassica
BGC0000857.1 |  | 0.44 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.43 | Other | ectoine | Methylarcula marina
BGC0000855.1 |  | 0.42 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.40 | Other | ectoine | Methylobacter marinus
BGC0000853.1 |  | 0.40 | Other | ectoine | Streptomyces anulatus
BGC0000852.1 |  | 0.39 | Other | ectoine | Sporosarcina pasteurii
BGC0000854.1 |  | 0.38 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000841.1 |  | 0.16 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid | Streptomyces clavuligerus ATCC 27064

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000859.1 |  | 0.80 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000856.1 |  | 0.80 | Other | ectoine | Methylophaga thalassica
BGC0000857.1 |  | 0.74 | Other | ectoine | Methylophaga alcalica
BGC0000860.1 |  | 0.74 | Other | ectoine | Methylarcula marina
BGC0000855.1 |  | 0.73 | Other | ectoine | Methylomicrobium kenyense
BGC0000858.1 |  | 0.72 | Other | ectoine | Methylobacter marinus
BGC0000853.1 |  | 0.72 | Other | ectoine | Streptomyces anulatus
BGC0000852.1 |  | 0.71 | Other | ectoine | Sporosarcina pasteurii
BGC0000854.1 |  | 0.71 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0000841.1 |  | 0.47 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid | Streptomyces clavuligerus ATCC 27064

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names