GCF_003317055.1_ASM331705v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_QNRX01000003 (original name was: NZ_QNRX01000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	ranthipeptide	101,360	122,700

NZ_QNRX01000007 (original name was: NZ_QNRX01000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	cyclic-lactone-autoinducer	96,021	116,730

NZ_QNRX01000021 (original name was: NZ_QNRX01000021.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	RiPP-like	41,510	48,123

NZ_QNRX01000024 (original name was: NZ_QNRX01000024.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	cyclic-lactone-autoinducer	21,578	38,670

Region	Type	From	To	Similarity
Region 3.1	ranthipeptide	101,360	122,700
Region 7.1	cyclic-lactone-autoinducer	96,021	116,730
Region 21.1	RiPP-like	41,510	48,123
Region 24.1	cyclic-lactone-autoinducer	21,578	38,670

No secondary metabolite regions were found in these records:: NZ_QNRX01000001 (original name was: NZ_QNRX01000001.1); NZ_QNRX01000002 (original name was: NZ_QNRX01000002.1); NZ_QNRX01000004 (original name was: NZ_QNRX01000004.1); NZ_QNRX01000005 (original name was: NZ_QNRX01000005.1); NZ_QNRX01000006 (original name was: NZ_QNRX01000006.1); NZ_QNRX01000008 (original name was: NZ_QNRX01000008.1); NZ_QNRX01000009 (original name was: NZ_QNRX01000009.1); NZ_QNRX01000010 (original name was: NZ_QNRX01000010.1); NZ_QNRX01000011 (original name was: NZ_QNRX01000011.1); NZ_QNRX01000012 (original name was: NZ_QNRX01000012.1); NZ_QNRX01000013 (original name was: NZ_QNRX01000013.1); NZ_QNRX01000014 (original name was: NZ_QNRX01000014.1); NZ_QNRX01000015 (original name was: NZ_QNRX01000015.1); NZ_QNRX01000016 (original name was: NZ_QNRX01000016.1); NZ_QNRX01000017 (original name was: NZ_QNRX01000017.1); NZ_QNRX01000018 (original name was: NZ_QNRX01000018.1); NZ_QNRX01000019 (original name was: NZ_QNRX01000019.1); NZ_QNRX01000020 (original name was: NZ_QNRX01000020.1); NZ_QNRX01000022 (original name was: NZ_QNRX01000022.1); NZ_QNRX01000023 (original name was: NZ_QNRX01000023.1); NZ_QNRX01000025 (original name was: NZ_QNRX01000025.1); NZ_QNRX01000026 (original name was: NZ_QNRX01000026.1); NZ_QNRX01000027 (original name was: NZ_QNRX01000027.1); NZ_QNRX01000028 (original name was: NZ_QNRX01000028.1); NZ_QNRX01000029 (original name was: NZ_QNRX01000029.1); NZ_QNRX01000030 (original name was: NZ_QNRX01000030.1); NZ_QNRX01000031 (original name was: NZ_QNRX01000031.1); NZ_QNRX01000032 (original name was: NZ_QNRX01000032.1); NZ_QNRX01000033 (original name was: NZ_QNRX01000033.1); NZ_QNRX01000034 (original name was: NZ_QNRX01000034.1); NZ_QNRX01000035 (original name was: NZ_QNRX01000035.1); NZ_QNRX01000036 (original name was: NZ_QNRX01000036.1); NZ_QNRX01000037 (original name was: NZ_QNRX01000037.1); NZ_QNRX01000038 (original name was: NZ_QNRX01000038.1); NZ_QNRX01000039 (original name was: NZ_QNRX01000039.1); NZ_QNRX01000040 (original name was: NZ_QNRX01000040.1); NZ_QNRX01000041 (original name was: NZ_QNRX01000041.1); NZ_QNRX01000042 (original name was: NZ_QNRX01000042.1); NZ_QNRX01000043 (original name was: NZ_QNRX01000043.1); NZ_QNRX01000044 (original name was: NZ_QNRX01000044.1); NZ_QNRX01000045 (original name was: NZ_QNRX01000045.1); NZ_QNRX01000046 (original name was: NZ_QNRX01000046.1)

Compact view

c00003_NZ_QNRX.. - Region 1 - ranthipeptide

Download region GenBank file

Download region SVG

Location: 101,360 - 122,700 nt. (total: 21,341 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.18	Other	nucleocidin	Streptomyces calvus
BGC0001887.1	0.13	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000599.1	0.12	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000695.1	0.10	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000807.1	0.08	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0001144.1	0.08	Polyketide	neosartoricin B	Trichophyton tonsurans CBS 112818
BGC0000684.1	0.08	Terpene	asperthecin	Aspergillus nidulans FGSC A4
BGC0000879.1	0.07	Other	toyocamycin, sangivamycin	Streptomyces rimosus
BGC0001591.1	0.05	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.05	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.50	Other	nucleocidin	Streptomyces calvus
BGC0001887.1	0.42	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000599.1	0.41	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000695.1	0.35	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0000807.1	0.32	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0001144.1	0.31	Polyketide	neosartoricin B	Trichophyton tonsurans CBS 112818
BGC0000684.1	0.30	Terpene	asperthecin	Aspergillus nidulans FGSC A4
BGC0000879.1	0.29	Other	toyocamycin, sangivamycin	Streptomyces rimosus
BGC0001591.1	0.23	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.23	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00007_NZ_QNRX.. - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

Download region SVG

Location: 96,021 - 116,730 nt. (total: 20,710 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.24	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000488.1	0.21	RiPP	circularin A	Clostridium beijerinckii
BGC0001534.1	0.19	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000602.1	0.17	RiPP	subtilosin A	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000521.1	0.17	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001535.1	0.17	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000539.1	0.17	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001618.1	0.17	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000542.1	0.17	RiPP	paenicidin B	Paenibacillus terrae
BGC0000523.1	0.16	RiPP	lactocin S	Lactobacillus sakei

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.57	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000488.1	0.53	RiPP	circularin A	Clostridium beijerinckii
BGC0001534.1	0.51	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000602.1	0.49	RiPP	subtilosin A	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000521.1	0.48	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001535.1	0.48	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000539.1	0.48	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001618.1	0.48	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000542.1	0.48	RiPP	paenicidin B	Paenibacillus terrae
BGC0000523.1	0.47	RiPP	lactocin S	Lactobacillus sakei

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00021_NZ_QNRX.. - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 41,510 - 48,123 nt. (total: 6,614 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000775.1	0.18	Saccharide	lipopolysaccharide	Legionella pneumophila
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000548.1	0.15	RiPP	salivaricin A	Streptococcus salivarius
BGC0000490.1	0.15	RiPP	garvicin ML	Lactococcus garvieae DCC43
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0001765.1	0.14	Saccharide	salecan	Agrobacterium tumefaciens
BGC0000759.1	0.14	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159
BGC0000768.1	0.14	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000797.1	0.14	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0001120.1	0.14	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000775.1	0.49	Saccharide	lipopolysaccharide	Legionella pneumophila
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000548.1	0.46	RiPP	salivaricin A	Streptococcus salivarius
BGC0000490.1	0.45	RiPP	garvicin ML	Lactococcus garvieae DCC43
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii
BGC0001765.1	0.43	Saccharide	salecan	Agrobacterium tumefaciens
BGC0000759.1	0.43	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159
BGC0000768.1	0.43	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000797.1	0.43	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0001120.1	0.43	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00024_NZ_QNRX.. - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

Download region SVG

Location: 21,578 - 38,670 nt. (total: 17,093 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000754.1	0.23	Saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000755.1	0.23	Saccharide	capsular polysaccharide	Avibacterium paragallinarum 221
BGC0000757.1	0.23	Saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000756.1	0.23	Saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000766.1	0.22	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000786.1	0.21	Saccharide	O-antigen	Edwardsiella ictaluri 93-146
BGC0000791.1	0.16	Saccharide	O-antigen	Cronobacter sakazakii
BGC0000739.1	0.16	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000737.1	0.16	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000777.1	0.15	Saccharide	lipopolysaccharide	Escherichia coli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000754.1	0.56	Saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000755.1	0.56	Saccharide	capsular polysaccharide	Avibacterium paragallinarum 221
BGC0000757.1	0.56	Saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000756.1	0.56	Saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000766.1	0.55	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000786.1	0.54	Saccharide	O-antigen	Edwardsiella ictaluri 93-146
BGC0000791.1	0.47	Saccharide	O-antigen	Cronobacter sakazakii
BGC0000739.1	0.47	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000737.1	0.47	Saccharide	capsular polysaccharide	Pasteurella multocida
BGC0000777.1	0.45	Saccharide	lipopolysaccharide	Escherichia coli

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names