GCF_002504285.1_ASM250428v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP023706.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	betalactone	988,284	1,013,552
Region 1.2	hserlactone	2,671,708	2,692,376
Region 1.3	thiopeptide	3,047,078	3,073,452	O-antigen	Saccharide	14%
Region 1.4	siderophore	3,244,355	3,258,988	xanthoferrin	Other	100%

NZ_CP023707.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	23,960	36,471	colicin V	RiPP	1%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	betalactone	988,284	1,013,552
Region 1.2	hserlactone	2,671,708	2,692,376
Region 1.3	thiopeptide	3,047,078	3,073,452	O-antigen	Saccharide	14%
Region 1.4	siderophore	3,244,355	3,258,988	xanthoferrin	Other	100%
Region 2.1	RiPP-like	23,960	36,471	colicin V	RiPP	1%

Compact view

NZ_CP023706.1 - Region 1 - betalactone

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Location: 988,284 - 1,013,552 nt. (total: 25,269 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.20	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.16	Other	FR-900098	Streptomyces rubellomurinus
BGC0000375.1	0.15	NRP	indigoidine	Streptomyces chromofuscus
BGC0001441.1	0.14	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001132.1	0.14	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.14	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.14	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001220.1	0.14	NRP	aculeacin A	Aspergillus japonicus
BGC0001479.1	0.14	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001758.1	0.14	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.52	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.46	Other	FR-900098	Streptomyces rubellomurinus
BGC0000375.1	0.46	NRP	indigoidine	Streptomyces chromofuscus
BGC0001441.1	0.44	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001132.1	0.44	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.43	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.43	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001220.1	0.43	NRP	aculeacin A	Aspergillus japonicus
BGC0001479.1	0.43	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001758.1	0.43	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP023706.1 - Region 2 - hserlactone

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Location: 2,671,708 - 2,692,376 nt. (total: 20,669 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000207.1	0.14	Polyketide	chartreusin	Streptomyces chartreusis
BGC0000636.1	0.08	Terpene	carotenoid	Brevibacterium linens
BGC0000259.1	0.06	Polyketide	prodigiosin	Serratia marcescens
BGC0001437.1	0.06	NRP	obafluorin	Pseudomonas fluorescens
BGC0001710.1	0.06	NRP	obafluorin	Pseudomonas fluorescens
BGC0000475.1	0.05	RiPP	patellamide A, patellamide C	Prochloron didemni
BGC0001148.1	0.05	NRP, RiPP	pheganomycin	Streptomyces cirratus
BGC0001340.1	0.05	Polyketide	byssochlamic acid	Byssochlamys fulva
BGC0001436.1	0.03	Polyketide	cornexistin	Paecilomyces divaricatus
BGC0001557.1	0.03	Polyketide	cornexistin	Paecilomyces divaricatus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000207.1	0.43	Polyketide	chartreusin	Streptomyces chartreusis
BGC0000636.1	0.31	Terpene	carotenoid	Brevibacterium linens
BGC0000259.1	0.25	Polyketide	prodigiosin	Serratia marcescens
BGC0001437.1	0.25	NRP	obafluorin	Pseudomonas fluorescens
BGC0001710.1	0.25	NRP	obafluorin	Pseudomonas fluorescens
BGC0000475.1	0.24	RiPP	patellamide A, patellamide C	Prochloron didemni
BGC0001148.1	0.23	NRP, RiPP	pheganomycin	Streptomyces cirratus
BGC0001340.1	0.22	Polyketide	byssochlamic acid	Byssochlamys fulva
BGC0001436.1	0.17	Polyketide	cornexistin	Paecilomyces divaricatus
BGC0001557.1	0.17	Polyketide	cornexistin	Paecilomyces divaricatus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP023706.1 - Region 3 - thiopeptide

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Location: 3,047,078 - 3,073,452 nt. (total: 26,375 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000784.1	0.26	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000781.1	0.16	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001285.1	0.07	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0000981.1	0.06	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E6
BGC0001302.1	0.06	Other	lomofungin	Streptomyces lomondensis
BGC0002012.1	0.05	Polyketide	julichrome Q3-3, julichrome Q3-5	Streptomyces afghaniensis 772
BGC0001283.1	0.05	Polyketide	arsono-polyketide	Streptomyces lividans 1326
BGC0000957.1	0.04	NRP, Polyketide	mycotrienin I	Streptomyces sp. XZQH13
BGC0001448.1	0.03	NRP	malacidin A, malacidin B	uncultured bacterium
BGC0000123.1	0.03	Polyketide	phoslactomycin B	Streptomyces sp. HK803

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000784.1	0.59	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000781.1	0.47	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001285.1	0.29	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0000981.1	0.24	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E6
BGC0001302.1	0.24	Other	lomofungin	Streptomyces lomondensis
BGC0002012.1	0.23	Polyketide	julichrome Q3-3, julichrome Q3-5	Streptomyces afghaniensis 772
BGC0001283.1	0.22	Polyketide	arsono-polyketide	Streptomyces lividans 1326
BGC0000957.1	0.19	NRP, Polyketide	mycotrienin I	Streptomyces sp. XZQH13
BGC0001448.1	0.17	NRP	malacidin A, malacidin B	uncultured bacterium
BGC0000123.1	0.15	Polyketide	phoslactomycin B	Streptomyces sp. HK803

Similar known gene clusters

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Thiopeptides

Core peptide predictions

No core peptides found.

NZ_CP023706.1 - Region 4 - siderophore

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Location: 3,244,355 - 3,258,988 nt. (total: 14,634 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001408.1	0.42	Other	xanthoferrin	Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000946.1	0.35	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000939.1	0.29	Other	aerobactin	Grimontia hollisae
BGC0001870.1	0.26	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000947.1	0.18	Other	vibrioferrin	Vibrio alginolyticus
BGC0001576.1	0.16	RiPP	divamide A	Prochloron didemni
BGC0000592.1	0.16	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000616.1	0.15	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000541.1	0.15	RiPP	paenicidin A	Paenibacillus polymyxa

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001408.1	0.73	Other	xanthoferrin	Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000946.1	0.68	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000939.1	0.63	Other	aerobactin	Grimontia hollisae
BGC0001870.1	0.60	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000947.1	0.49	Other	vibrioferrin	Vibrio alginolyticus
BGC0001576.1	0.47	RiPP	divamide A	Prochloron didemni
BGC0000592.1	0.46	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000616.1	0.46	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000541.1	0.45	RiPP	paenicidin A	Paenibacillus polymyxa

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP023707.1 - Region 1 - RiPP-like

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Location: 23,960 - 36,471 nt. (total: 12,512 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001133.1	0.08	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001555.1	0.04	RiPP	colicin V	Escherichia coli chi7122
BGC0001189.1	0.03	NRP	taiwachelin	Cupriavidus taiwanensis LMG 19424
BGC0000700.1	0.03	Saccharide	istamycin	Streptomyces tenjimariensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001133.1	0.32	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001555.1	0.19	RiPP	colicin V	Escherichia coli chi7122
BGC0001189.1	0.16	NRP	taiwachelin	Cupriavidus taiwanensis LMG 19424
BGC0000700.1	0.16	Saccharide	istamycin	Streptomyces tenjimariensis

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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