LOCUS       NC_010506.1             5563 bp    DNA     linear   UNK 01-JAN-1980
DEFINITION  NC_010506.1 Shewanella woodyi ATCC 51908, complete sequence.
ACCESSION   NC_010506
VERSION     NC_010506.1
KEYWORDS    .
SOURCE      
  ORGANISM  
            .
COMMENT     ##antiSMASH-Data-START##
            Version      :: 6.1.1
            Run date     :: 2024-03-14 15:10:38
            NOTE: This is a single cluster extracted from a larger record!
            Orig. start  :: 2207731
            Orig. end    :: 2213294
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     CDS             complement(1..357)
                     /locus_tag="ctg1_1815"
                     /transl_table=11
                     /translation="VSRSHIRHELSKLESCLRKEIGELANKHQIKLESKQSSLCEIIEV
                     LTQAKLCDEPLFCRLTKLDAAFCQLDIGLYGLCADCENEIEPERLAWDMLEQRCAECAE
                     NYEHQHRQELRLNH"
     protocluster    1..5563
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="False"
                     /core_location="[2210191:2211028](+)"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      2461..3297
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     cand_cluster    1..5563
                     /candidate_cluster_number="1"
                     /contig_edge="False"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193)"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     region          1..5563
                     /candidate_cluster_numbers="1"
                     /contig_edge="False"
                     /product="RiPP-like"
                     /region_number="3"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193)"
                     /tool="antismash"
     CDS             complement(535..1482)
                     /locus_tag="ctg1_1816"
                     /transl_table=11
                     /translation="MRVILAPMEGVADAPMRSLLTSVGGYDLVISEFIRVVDQLLPEKV
                     FYRLCAELAYGSKTKAGTPVRLQLLGQHPNWMAENAIRAIELGSLGVDLNYGCPAPMVN
                     RSNGGAALLKEPETIYKVTKAVREAVPSSHPVSAKIRLGWDDKSRCVEIAQAIESAGAT
                     ELTVHARTKEEGYRPPAHWEYINLIREAIAIPVIANGEVWCHQDYLKCQAASGCDDVMI
                     GRGALAVPNLAHVIKTNQVKMPWNQVMQLLVQYSEYEIVSVKEKYYPARIKQWLKFMVK
                     QYPQADTLFAQVRVMKQTQEILALLRSEAENQYL"
     PFAM_domain     complement(580..1473)
                     /aSDomain="Dus"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF01207.19"
                     /description="Dihydrouridine synthase (Dus)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1816_0064"
                     /evalue="7.70E-78"
                     /label="ctg1_1816"
                     /locus_tag="ctg1_1816"
                     /protein_end="301"
                     /protein_start="3"
                     /score="261.8"
                     /tool="antismash"
                     /translation="ILAPMEGVADAPMRSLLTSVGGYDLVISEFIRVVDQLLPEKVFYR
                     LCAELAYGSKTKAGTPVRLQLLGQHPNWMAENAIRAIELGSLGVDLNYGCPAPMVNRSN
                     GGAALLKEPETIYKVTKAVREAVPSSHPVSAKIRLGWDDKSRCVEIAQAIESAGATELT
                     VHARTKEEGYRPPAHWEYINLIREAIAIPVIANGEVWCHQDYLKCQAASGCDDVMIGRG
                     ALAVPNLAHVIKTNQVKMPWNQVMQLLVQYSEYEIVSVKEKYYPARIKQWLKFMVKQYP
                     QADTLFAQVRVMKQTQE"
     CDS             1880..2311
                     /locus_tag="ctg1_1817"
                     /transl_table=11
                     /translation="MNLVKKTVVAAALGTVVVGSAFAAEAQANPFGYSQMESGYQLVDG
                     EGKCGEGKCGGDKKKAKEGKCGEGKCGGDMKKAKEGKCGEGKCGGDMKKAKEGKCGEGK
                     CGGDMKKAKEGKCGEGKCGGDKKKGKEGKCGEGKCGGSK"
     CDS             2461..3297
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: DUF692"
                     /gene_kind="biosynthetic"
                     /locus_tag="ctg1_1818"
                     /sec_met_domain="DUF692 (E-value: 1.6e-104, bitscore:
                     347.0, seeds: 7, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MDERAKVGLGLRREMLDEFCQSSPQEINFFEVAPENWMTLGGKYG
                     RQFKQLTEQHEFFCHGLSLSIGGPAALDVQFVKNIKSFMDEHKISVYSEHLSYCSGIGH
                     MYDLMPIPFTEEAVHYVAKRVKQVEDILERALILENVSFYTAPGAQMSELEFVTAVLDE
                     ADCKMLLDVNNIYVNSINHQYDAKVFLRAMPTERIEYLHIAGHYEEDKDLIVDTHGADV
                     ISPVWELLAECYQTHGVFPTLLERDFNIPETPVLLEEINQIAQYQQLEIANLARRA"
     PFAM_domain     2476..3264
                     /aSDomain="DUF692"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF05114.15"
                     /description="Protein of unknown function (DUF692)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1818_0065"
                     /evalue="2.10E-103"
                     /label="ctg1_1818"
                     /locus_tag="ctg1_1818"
                     /protein_end="268"
                     /protein_start="5"
                     /score="345.2"
                     /tool="antismash"
                     /translation="KVGLGLRREMLDEFCQSSPQEINFFEVAPENWMTLGGKYGRQFKQ
                     LTEQHEFFCHGLSLSIGGPAALDVQFVKNIKSFMDEHKISVYSEHLSYCSGIGHMYDLM
                     PIPFTEEAVHYVAKRVKQVEDILERALILENVSFYTAPGAQMSELEFVTAVLDEADCKM
                     LLDVNNIYVNSINHQYDAKVFLRAMPTERIEYLHIAGHYEEDKDLIVDTHGADVISPVW
                     ELLAECYQTHGVFPTLLERDFNIPETPVLLEEINQIAQYQQ"
     CDS             3297..4043
                     /locus_tag="ctg1_1819"
                     /transl_table=11
                     /translation="MHFLEIQQSFIDHIKEPSSTLPSGTDARRMKVYRELFFNNVDGFI
                     SSAFPVLKTLYSDEDWLALVQTFFVTHHCQTPIFIEIAQEFLAFVQSEYEFQPNDPVFM
                     LELAHYEYMELVVAVAKENPQHKPIKGGIAEFPICLADTAKVLQYSFDVQHISEEYCPE
                     EPSSSPQFFCLYRDGDDEVIFLQLTPLSAQVLGFLSQYEAVTLDDVNSWLAGIYTDMDK
                     TMLTQGAKQLLEDLASKGVIQQFVPN"
     PFAM_domain     3309..3566
                     /aSDomain="DUF2063"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF09836.11"
                     /description="Putative DNA-binding domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1819_0066"
                     /evalue="9.70E-25"
                     /label="ctg1_1819"
                     /locus_tag="ctg1_1819"
                     /protein_end="90"
                     /protein_start="4"
                     /score="86.7"
                     /tool="antismash"
                     /translation="EIQQSFIDHIKEPSSTLPSGTDARRMKVYRELFFNNVDGFISSAF
                     PVLKTLYSDEDWLALVQTFFVTHHCQTPIFIEIAQEFLAFV"
     CDS             4175..4294
                     /locus_tag="ctg1_1820"
                     /transl_table=11
                     /translation="MSQPFKDAFNIFYFIGFILVLLIPTLPATLSWLKFSGLL"
     CDS             4473..4841
                     /locus_tag="ctg1_1821"
                     /transl_table=11
                     /translation="MVLKRGFYLICGLCSLFLGLLGIPLPILPTVPFILLAAFCFARSS
                     ERLHLWLMNHPWFSEALNDWDEKRAIRKGLKRKAYIVSGLSFAVSITIVPIIWVKVILL
                     CFAIGLGLYLRQIPELED"
     PFAM_domain     4485..4826
                     /aSDomain="DUF454"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF04304.15"
                     /description="Protein of unknown function (DUF454)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1821_0067"
                     /evalue="2.00E-37"
                     /label="ctg1_1821"
                     /locus_tag="ctg1_1821"
                     /protein_end="118"
                     /protein_start="4"
                     /score="127.8"
                     /tool="antismash"
                     /translation="RGFYLICGLCSLFLGLLGIPLPILPTVPFILLAAFCFARSSERLH
                     LWLMNHPWFSEALNDWDEKRAIRKGLKRKAYIVSGLSFAVSITIVPIIWVKVILLCFAI
                     GLGLYLRQIP"
     CDS             5018..5563
                     /locus_tag="ctg1_1822"
                     /transl_table=11
                     /translation="MNNDSLAIIKQSIKTIPDYPKPGILFRDVTSLLEDHTAYKATMDI
                     LVQHYKDHGFTKIVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGH
                     DVLELHTDAINENDKVLVVDDLLATGGTIEATVKLIRKLGGEVKHAAFVISLPDLGGAK
                     RLEEMDLELVTLCEFEGE"
     aSDomain        5042..5548
                     /aSDomain="TIGR01090"
                     /aSTool="tigrfam"
                     /description="apt: adenine phosphoribosyltransferase"
                     /detection="hmmscan"
                     /domain_id="TIGRFam_ctg1_1822_0012"
                     /evalue="8.30E-73"
                     /identifier="TIGR01090"
                     /label="ctg1_1822"
                     /locus_tag="ctg1_1822"
                     /protein_end="177"
                     /protein_start="8"
                     /score="242.0"
                     /tool="antismash"
                     /translation="IKQSIKTIPDYPKPGILFRDVTSLLEDHTAYKATMDILVQHYKDH
                     GFTKIVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDVLELHTD
                     AINENDKVLVVDDLLATGGTIEATVKLIRKLGGEVKHAAFVISLPDLGGAKRLEEMDLE
                     LVTLCE"
     PFAM_domain     5105..5479
                     /aSDomain="Pribosyltran"
                     /aSTool="clusterhmmer"
                     /database="34.0"
                     /db_xref="PF00156.29"
                     /description="Phosphoribosyl transferase domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_1822_0068"
                     /evalue="7.30E-14"
                     /label="ctg1_1822"
                     /locus_tag="ctg1_1822"
                     /protein_end="154"
                     /protein_start="29"
                     /score="51.5"
                     /tool="antismash"
                     /translation="TSLLEDHTAYKATMDILVQHYKDHGFTKIVGTEARGFLFGAPLAL
                     ELGVGFVPVRKPGKLPRETISESYELEYGHDVLELHTDAINENDKVLVVDDLLATGGTI
                     EATVKLIRKLGGEVKHAAFVI"
ORIGIN
        1 ctaatgatta agccttagct cttgcctatg ttgatgctca tagttttcag cgcattctgc
       61 acatctttgt tcgagcatat cccaagctag cctttcaggt tcaatctcat tctcacaatc
      121 agcgcataac ccatagagtc caatatcgag ctgacaaaaa gcggcgtcga gttttgtgag
      181 tctacaaaat aatggctcat cacatagctt tgcttgagtt aagacctcga taatctcaca
      241 gaggctactc tgcttacttt ctagttttat ttggtgttta ttggcaagct cacctatctc
      301 cttcctgaga caactttcta gtttcgacaa ttcatgtctg atgtgggatc tgctcacggg
      361 aatatgccta agttatattt ctatcggaca ttaagtctaa acaggtgagg aggaagcgtt
      421 atgactaaga tcaaaactca gtcacattta cactatttat atggataaat agcgtcaaat
      481 gagcgatagc tttgatcttt aactgccatt ttgtcggctt ttacttatgg cagcctatag
      541 gtattgattc tctgcttcac ttcttaacag ggcgaggatc tcttgagttt gtttcatcac
      601 gcgcacttgt gcaaataggg tgtcggcctg tgggtattgt ttcaccataa atttcaacca
      661 ctgtttgatt ctagctgggt aatacttctc tttgacgctg acaatttcat attcagaata
      721 ttgcactaat aactgcatca cttggttcca gggcatctta acttggttgg ttttgatgac
      781 atgggctaaa ttgggaaccg ctaacgcccc ccgtcctatc atgacgtcat cgcatccact
      841 ggcagcctga cattttaaat aatcttgatg acaccatact tcaccattag cgatgactgg
      901 gatagcaatc gcttccctta ttaaattgat atattcccaa tgggccggag ggcggtaacc
      961 ctcctctttg gttctagcat gtacagtgag ttcggtagca ccagctgatt caatagcttg
     1021 agctatctct acgcaacggc ttttatcatc ccagcctaat ctgattttgg ccgaaactgg
     1081 gtgtgatgaa ggcactgcct ctcttacggc tttagtgact ttatagatag tttcaggttc
     1141 tttaagtaaa gcagcgccac cattgcttct gttaaccatg ggggctgggc aaccgtaatt
     1201 gaggtcaacg ccgagtgagc caagctcgat agctcttatg gcgttttcag ccatccaatt
     1261 tgggtgttga cccagtagct gtaatctaac cggggttcca gctttggttt tactaccata
     1321 ggctaattct gcacataagc gataaaagac tttttcaggt aatagctgat ccacaactcg
     1381 aataaattcg ctaataacaa gatcataacc gccaacgcta gtaagcagtg aacgcattgg
     1441 agcatcggca acgccttcca ttggagcaag tattacacgc attgttgatt ctttacctta
     1501 cagatcatta agtggaccca ctttggagtc gattgaattg agcgtcattt tgaggcgttt
     1561 ttggaaatgg tgttgttgca gccatactat caacattcaa aaataatgcc gcgggatccg
     1621 cctaaaccta ttgcttagag gttcttagag gccagagata ttttacatta agctgtgaat
     1681 agatacaaaa aactatcttg atgctctggc ctgatagtgg gataaaaagt tgcgaatgtg
     1741 ctcattatgc gtcataaatg tgagcgttat agaaaaaatg aaataaaatt gaagtgtgtc
     1801 gggtctatta atgcaagcca gctgacaaca atgtcgttgg caacaaaaac gacttaaatt
     1861 aatacggaag gaaatcatta tgaatttagt taaaaaaaca gttgttgctg ctgctttagg
     1921 tactgttgtt gtcggttcag cttttgctgc ggaagcgcaa gcaaatccat ttggttatag
     1981 ccaaatggag tcaggttacc agcttgttga cggtgaagga aaatgtggcg aaggtaaatg
     2041 tggtggcgac aagaaaaagg ccaaagaggg aaaatgtggc gaaggtaagt gtggcggcga
     2101 catgaagaaa gccaaagagg gaaaatgtgg cgaaggtaag tgtggcggcg acatgaagaa
     2161 ggccaaagag ggtaaatgtg gtgaaggcaa gtgtggcggc gacatgaaga aagccaaaga
     2221 gggtaaatgt ggtgaaggca agtgtggcgg cgataaaaag aaaggtaaag aaggtaagtg
     2281 tggagaaggc aaatgtggtg gcagtaagta atttgtcact gaaacattgc tctggaacga
     2341 tacaatagat ccggtgagag ctattgttaa tttaaggcca gtttatctgg ccttaattgt
     2401 ttctgagtgt atgtcggcat tacaatttag ttagatatga tgaaacagca ggagagtggg
     2461 atggatgagc gtgcaaaagt aggactcggt cttagacgag agatgctcga tgaattttgt
     2521 cagagctctc ctcaggagat caattttttt gaagtcgctc cagaaaactg gatgacctta
     2581 ggtggaaagt atgggcggca gtttaagcag ttaactgagc agcatgaatt tttctgtcat
     2641 gggttatccc tctcgattgg tggacctgca gcgctcgatg ttcagtttgt aaaaaatatt
     2701 aagtccttca tggatgagca taaaatctct gtctattctg agcatttaag ttattgctca
     2761 ggtatcggtc atatgtacga tttaatgccg atccccttta cggaggaggc ggtgcactac
     2821 gtcgccaaac gagtaaaaca agttgaagat attttagaac gcgcgcttat tctcgaaaat
     2881 gtctcttttt atacagcgcc tggtgcccag atgtcggagc ttgagttcgt cactgcggta
     2941 ttagatgaag cagactgtaa gatgcttttg gatgtgaata atatctatgt taattccatc
     3001 aatcaccaat atgacgcaaa agtttttttg cgagctatgc caacagagcg gatagagtac
     3061 ctccatatag cgggccatta tgaggaagat aaagatctga ttgtcgatac tcatggcgcg
     3121 gatgtgatct caccagtttg ggagttgttg gctgagtgct accagactca tggtgtattt
     3181 cccactttgt tagagcgaga ctttaatatt ccagaaacac ctgttttgtt ggaggagatc
     3241 aatcaaattg ctcaatatca acagctagag attgcgaatt tagctaggag agcataatgc
     3301 actttttaga gatccaacag tcatttattg accatataaa agagccttcc tcaacactac
     3361 ccagtggaac tgatgcgcga agaatgaaag tgtataggga gctgtttttt aataatgtag
     3421 atgggtttat ctcaagtgcc tttcctgtgt taaagacctt gtatagcgat gaggattggc
     3481 tagcattagt acagactttc tttgtgactc atcactgtca aacccccata tttattgaga
     3541 tagctcagga gtttttagct tttgtacaaa gtgaatacga atttcagccg aacgatcctg
     3601 tcttcatgct cgaactggca cattacgaat atatggagtt agttgttgct gtcgctaaag
     3661 agaacccaca acataagcca attaaggggg ggattgctga gtttcctata tgtttggccg
     3721 atacagcaaa agtgctgcaa tactcatttg atgttcaaca tattagcgaa gagtactgcc
     3781 ctgaagagcc tagctcgtca ccacagtttt tctgcctcta tcgagacggt gatgatgagg
     3841 tgatattttt gcagttaacg ccattatctg cacaggtttt aggttttttg tctcaatatg
     3901 aagctgtgac tcttgatgat gtaaacagtt ggctagcagg tatctatact gatatggata
     3961 aaacgatgct aacccaaggt gcgaagcagc tgttagaaga ccttgcatcg aaaggagtta
     4021 ttcaacaatt tgtccctaat taagtaggag atgattaagg attgaattca aacaaaggta
     4081 ttaaactcgc ttcctaaatt gtgagcttca cactataatg actacataaa ttgatctaga
     4141 tcaataaaac gtcgtaaatt attgtgagga agtcatgagt cagccgttta aagatgcatt
     4201 taacattttc tattttattg gttttattct tgtgttgtta ataccaacct taccagcgac
     4261 attgtcatgg ttaaaattta gtggcttgct ctaattattg attgaaattc atataaacta
     4321 accactcttt tgagtggttt ttttgtacat ggaagtgctt attcctgata gtaaggatag
     4381 cgatgaaggg gatttgtttt tatactcaga ggcttttgtg aacaggctat tttatctgga
     4441 aatagctgct gcatatcttg ttgaggattg agatggtttt aaagcgtggc ttttatctta
     4501 tttgtggctt gtgtagctta tttttaggtt tattggggat cccgctgccc atattgccaa
     4561 ccgtaccatt tatcctgtta gcggcattct gttttgcacg ttcgagcgag cgtttacatc
     4621 tatggttaat gaatcaccct tggttttcag aggcgctaaa tgactgggat gaaaaacggg
     4681 ctatacgaaa aggcttaaag agaaaggcat acattgtcag tggcttaagt tttgctgtta
     4741 gcattactat tgtccctata atttgggtga aggtgattct tttatgtttt gcgattggat
     4801 tggggttgta ccttaggcag atccctgaat tagaggatta acgagtgtat aaatcattgt
     4861 aaaagggagc atgcttatga gtttatgaga tcccctcgtc aaaatactcc taattagcac
     4921 tccagcttgt tgcaactgaa tctaaagcgg cttaagcttt agccggattt taaaacatcg
     4981 gcagctaaac ttgtcgacaa aaccaaaaga tgatggcatg aataacgata gcttagcgat
     5041 aataaaacag agtattaaaa ctatcccgga ttatccaaaa cccgggatcc tatttagaga
     5101 cgtgaccagt ctacttgaag accataccgc ttataaagca accatggata ttttagttca
     5161 acactataaa gaccatggtt ttactaagat agtcggtact gaagcacgtg gttttctatt
     5221 cggcgctccg ttagcgttag agcttggtgt tggcttcgtc ccagtgcgta aaccaggcaa
     5281 attgccacgt gaaacgatct ctgaaagtta tgagcttgag tatggtcatg atgtattaga
     5341 gcttcatact gatgctatta atgaaaatga caaagtatta gttgttgatg atctgctagc
     5401 gacaggcggt acgattgaag caacggttaa gcttattcgc aaattaggtg gtgaagtgaa
     5461 acatgcggct tttgtgatct ctttacctga cttaggtggc gctaaacgtc ttgaagagat
     5521 ggatcttgaa ctggttacac tttgcgagtt tgaaggcgaa taa
//
