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Overview
1.1
1.2
1.3
1.4
1.5
1.6
1.7

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP059567.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | arylpolyene,resorcinol | 513,163 | 559,604 |
Region 2 | arylpolyene | 836,591 | 875,409 | APE Vf | Other | 10%
Region 3 | betalactone | 1,268,284 | 1,295,772 | mycosubtilin | NRP + Polyketide | 20%
Region 4 | arylpolyene | 1,422,406 | 1,463,614 |
Region 5 | terpene | 1,488,641 | 1,509,028 |
Region 6 | terpene | 1,668,391 | 1,689,206 |
Region 7 | RiPP-like | 2,412,551 | 2,419,744 |

NZ_CP059567.1 - Region 1 - arylpolyene,resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 513,163 - 559,604 nt. (total: 46,442 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | --- | ---
BGC0000880.1 |  |  | 0.36 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000896.1 |  |  | 0.35 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0001618.1 |  |  | 0.33 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0001927.1 |  |  | 0.32 | Other | A-94964 | Streptomyces sp.
BGC0001526.1 |  |  | 0.32 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000756.1 |  |  | 0.32 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0001222.1 |  |  | 0.32 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  |  | 0.32 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000486.1 |  |  | 0.32 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000602.1 |  |  | 0.31 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000880.1 |  | 0.49 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0000896.1 |  | 0.49 | Other | cycloserine | Streptomyces lavendulae subsp. lavendulae
BGC0001618.1 |  | 0.47 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0001927.1 |  | 0.47 | Other | A-94964 | Streptomyces sp.
BGC0001526.1 |  | 0.47 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000756.1 |  | 0.47 | Saccharide | capsular polysaccharide | Avibacterium paragallinarum
BGC0001222.1 |  | 0.47 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.47 | RiPP | gassericin A | Lactobacillus gasseri
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000602.1 |  | 0.46 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP059567.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 836,591 - 875,409 nt. (total: 38,819 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000228.1 |  | 0.21 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000234.1 |  | 0.21 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001723.1 |  | 0.19 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000867.1 |  | 0.18 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0002000.1 |  | 0.17 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0002008.1 |  | 0.17 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.17 | Other | APE Ec | Escherichia coli CFT073
BGC0000768.1 |  | 0.17 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0001177.1 |  | 0.17 | Polyketide | mensacaricin | Streptomyces bottropensis
BGC0000596.1 |  | 0.16 | RiPP | SLI-2138 | Streptomyces lividans TK24

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000228.1 |  | 0.53 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000234.1 |  | 0.53 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001723.1 |  | 0.51 | Polyketide | oviedomycin | Streptomyces antibioticus
BGC0000867.1 |  | 0.50 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0002000.1 |  | 0.49 | Polyketide | setomimycin | Streptomyces aurantiacus JA 4570
BGC0002008.1 |  | 0.48 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.48 | Other | APE Ec | Escherichia coli CFT073
BGC0000768.1 |  | 0.48 | Saccharide | gellan polysaccharide | Sphingomonas elodea ATCC 31461
BGC0001177.1 |  | 0.48 | Polyketide | mensacaricin | Streptomyces bottropensis
BGC0000596.1 |  | 0.47 | RiPP | SLI-2138 | Streptomyces lividans TK24

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP059567.1 - Region 3 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,268,284 - 1,295,772 nt. (total: 27,489 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | betalactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.25 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.25 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000234.1 |  | 0.21 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001120.1 |  | 0.21 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000879.1 |  | 0.21 | Other | toyocamycin, sangivamycin | Streptomyces rimosus
BGC0000258.1 |  | 0.20 | Polyketide | prodigiosin | Serratia sp.
BGC0000649.1 |  | 0.20 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000259.1 |  | 0.18 | Polyketide | prodigiosin | Serratia marcescens
BGC0000874.1 |  | 0.17 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000782.1 |  | 0.17 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001808.1 |  | 0.59 | Other | toyocamycin | Streptomyces diastatochromogenes
BGC0000881.1 |  | 0.59 | Other | toyocamycin | Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000234.1 |  | 0.54 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001120.1 |  | 0.54 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000879.1 |  | 0.53 | Other | toyocamycin, sangivamycin | Streptomyces rimosus
BGC0000258.1 |  | 0.53 | Polyketide | prodigiosin | Serratia sp.
BGC0000649.1 |  | 0.53 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000259.1 |  | 0.50 | Polyketide | prodigiosin | Serratia marcescens
BGC0000874.1 |  | 0.49 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000782.1 |  | 0.48 | Saccharide | O-antigen | Burkholderia pseudomallei 1026b

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP059567.1 - Region 4 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,422,406 - 1,463,614 nt. (total: 41,209 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000255.1 |  | 0.19 | Polyketide | pederin | Uncultured bacterium
BGC0001366.1 |  | 0.17 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000810.1 |  | 0.16 | Alkaloid | benzoxazinone DIMBOA | Zea mays
BGC0001465.1 |  | 0.16 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0001687.1 |  | 0.15 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12
BGC0000668.1 |  | 0.15 | Terpene, Alkaloid | 12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole | Hapalosiphon welwitschii UTEX B 1830
BGC0001594.1 |  | 0.15 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0000840.1 |  | 0.15 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0001534.1 |  | 0.15 | Other | branched-chain fatty acids | Streptomyces filamentosus
BGC0002008.1 |  | 0.14 | Other | aryl polyenes | Xenorhabdus doucetiae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000255.1 |  | 0.51 | Polyketide | pederin | Uncultured bacterium
BGC0001366.1 |  | 0.48 | Polyketide | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0000810.1 |  | 0.47 | Alkaloid | benzoxazinone DIMBOA | Zea mays
BGC0001465.1 |  | 0.46 | Other | bromopyrroles/bromophenols | Marinomonas mediterranea MMB-1
BGC0001687.1 |  | 0.46 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSL12
BGC0000668.1 |  | 0.46 | Terpene, Alkaloid | 12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole | Hapalosiphon welwitschii UTEX B 1830
BGC0001594.1 |  | 0.45 | Alkaloid | fischerindole L | Fischerella muscicola UTEX 1829
BGC0000840.1 |  | 0.45 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0001534.1 |  | 0.44 | Other | branched-chain fatty acids | Streptomyces filamentosus
BGC0002008.1 |  | 0.44 | Other | aryl polyenes | Xenorhabdus doucetiae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP059567.1 - Region 5 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,488,641 - 1,509,028 nt. (total: 20,388 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000630.1 |  | 0.21 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000646.1 |  | 0.21 | Terpene | β-carotein | uncultured bacterium
BGC0000664.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1 |  | 0.20 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000640.1 |  | 0.20 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0001456.1 |  | 0.19 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000656.1 |  | 0.19 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000638.1 |  | 0.19 | Terpene | carotenoid | Pantoea ananatis
BGC0000642.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.65 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000630.1 |  | 0.54 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000646.1 |  | 0.54 | Terpene | β-carotein | uncultured bacterium
BGC0000664.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1 |  | 0.53 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000640.1 |  | 0.52 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0001456.1 |  | 0.51 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000656.1 |  | 0.51 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000638.1 |  | 0.50 | Terpene | carotenoid | Pantoea ananatis
BGC0000642.1 |  | 0.50 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP059567.1 - Region 6 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,668,391 - 1,689,206 nt. (total: 20,816 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.33 | Terpene | carotenoid | Myxococcus xanthus
BGC0001456.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000633.1 |  | 0.21 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001227.1 |  | 0.20 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000664.1 |  | 0.20 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000751.1 |  | 0.19 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae
BGC0000649.1 |  | 0.18 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001903.1 |  | 0.15 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0001897.1 |  | 0.14 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000943.1 |  | 0.12 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.66 | Terpene | carotenoid | Myxococcus xanthus
BGC0001456.1 |  | 0.54 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000633.1 |  | 0.53 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001227.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000664.1 |  | 0.52 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000751.1 |  | 0.52 | Saccharide | capsular polysaccharide | Actinobacillus pleuropneumoniae
BGC0000649.1 |  | 0.50 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001903.1 |  | 0.44 | Other | neocarazostatin A | Streptomyces sp. MA37
BGC0001897.1 |  | 0.43 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0000943.1 |  | 0.40 | Other | staphylobactin | Staphylococcus aureus subsp. aureus NCTC 8325

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
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NZ_CP059567.1 - Region 7 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
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Location: 2,412,551 - 2,419,744 nt. (total: 7,194 nt) Show pHMM detection rules used
Region on contig edge.
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

No matches found.

No matches found.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names