GCF_003330785.1_ASM333078v1_genomic - 9 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP024934.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS	1,372,309	1,439,228	gramibactin	NRP	100%
Region 1.2	terpene	1,866,314	1,887,216
Region 1.3	arylpolyene	3,061,244	3,106,129	aryl polyenes	Other	38%

NZ_CP024935.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	phosphonate	291,584	333,308	oxalomycin B	NRP + Polyketide	6%
Region 2.2	redox-cofactor	696,288	718,540
Region 2.3	hserlactone	2,299,446	2,320,039
Region 2.4	RRE-containing	2,373,259	2,393,495	malleobactin A / malleobactin B / malleobactin C / malleobactin D	NRP:NRP siderophore	7%
Region 2.5	terpene	2,448,679	2,467,537
Region 2.6	terpene	2,634,759	2,658,958	malleobactin A / malleobactin B / malleobactin C / malleobactin D	NRP:NRP siderophore	11%

No secondary metabolite regions were found in these records:: NZ_CP024936.1

Compact view

NZ_CP024934.1 - Region 1 - NRPS

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Location: 1,372,309 - 1,439,228 nt. (total: 66,920 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001999.1	0.77	NRP	gramibactin	Paraburkholderia graminis C4D1M
BGC0000389.1	0.38	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000426.1	0.36	NRP	sevadicin	Paenibacillus larvae
BGC0000410.1	0.34	NRP	pseudomonine	Pseudomonas fluorescens
BGC0000438.1	0.33	NRP	syringopeptin 25A	Pseudomonas syringae pv. syringae
BGC0001561.1	0.33	NRP	curacomycin	Streptomyces curacoi
BGC0001479.1	0.33	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000349.1	0.33	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0000427.1	0.32	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001826.1	0.32	NRP	xeneprotides A-C	Xenorhabdus sp. KJ12.1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001999.1	0.92	NRP	gramibactin	Paraburkholderia graminis C4D1M
BGC0000389.1	0.71	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000426.1	0.69	NRP	sevadicin	Paenibacillus larvae
BGC0000410.1	0.67	NRP	pseudomonine	Pseudomonas fluorescens
BGC0000438.1	0.67	NRP	syringopeptin 25A	Pseudomonas syringae pv. syringae
BGC0001561.1	0.67	NRP	curacomycin	Streptomyces curacoi
BGC0001479.1	0.67	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000349.1	0.66	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0000427.1	0.66	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001826.1	0.65	NRP	xeneprotides A-C	Xenorhabdus sp. KJ12.1

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 1372308 - 1439228:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (asp - thr - thr - D-X - gly) + (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1229

Search NORINE for peptide: strict or relaxed

AMP-binding (108..553): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: iTyyiGTghK
Nearest Stachelhaus code:: lys-b
Stachelhaus code match:: 40% (weak)

ctg1_1241

Search NORINE for peptide: strict or relaxed

AMP-binding (53..501): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmggfGClFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

ctg1_1242

Search NORINE for peptide: strict or relaxed

AMP-binding (20..503): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1261..1667): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (2388..2793): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (3470..3871): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVhrtGLVaK
Nearest Stachelhaus code:: d-lyserg
Stachelhaus code match:: 60% (weak)

AMP-binding (5017..5413): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQiGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

ctg1_1243

Search NORINE for peptide: strict or relaxed

AMP-binding (553..1005): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVhrtGLVaK
Nearest Stachelhaus code:: d-lyserg
Stachelhaus code match:: 60% (weak)

NZ_CP024934.1 - Region 2 - terpene

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Location: 1,866,314 - 1,887,216 nt. (total: 20,903 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000928.1	0.16	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.16	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000527.1	0.12	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000515.1	0.10	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0001727.1	0.09	RiPP	paenilan	Paenibacillus polymyxa E681
BGC0000897.1	0.09	Other	dehydrophos	Streptomyces luridus
BGC0000842.1	0.09	Other (Non-NRP beta-lactam)	carbapenem MM4550	Streptomyces argenteolus
BGC0000668.1	0.08	Terpene, Alkaloid	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830
BGC0001701.1	0.08	RiPP	nisin O	Blautia obeum
BGC0000310.1	0.08	NRP	bacitracin	Bacillus licheniformis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000928.1	0.47	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.47	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000527.1	0.39	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000515.1	0.35	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0001727.1	0.34	RiPP	paenilan	Paenibacillus polymyxa E681
BGC0000897.1	0.34	Other	dehydrophos	Streptomyces luridus
BGC0000842.1	0.32	Other (Non-NRP beta-lactam)	carbapenem MM4550	Streptomyces argenteolus
BGC0000668.1	0.31	Terpene, Alkaloid	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830
BGC0001701.1	0.31	RiPP	nisin O	Blautia obeum
BGC0000310.1	0.30	NRP	bacitracin	Bacillus licheniformis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP024934.1 - Region 3 - arylpolyene

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Location: 3,061,244 - 3,106,129 nt. (total: 44,886 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000836.1	0.28	Other	APE Ec	Escherichia coli CFT073
BGC0002008.1	0.28	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000231.1	0.24	Polyketide	griseusin	Streptomyces griseus
BGC0000889.1	0.24	Other	bagremycin A, bagremycin B	Streptomyces sp. WK-5344
BGC0000228.1	0.23	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001897.1	0.22	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0002029.1	0.22	Other	bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C	Streptomyces lunaelactis
BGC0001592.1	0.22	Other	ferroverdin	Streptomyces lunaelactis
BGC0000248.1	0.22	Polyketide	naphtocyclinone	Streptomyces arenae
BGC0000219.1	0.21	Polyketide, Saccharide	elloramycin	Streptomyces olivaceus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000836.1	0.62	Other	APE Ec	Escherichia coli CFT073
BGC0002008.1	0.61	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000231.1	0.58	Polyketide	griseusin	Streptomyces griseus
BGC0000889.1	0.57	Other	bagremycin A, bagremycin B	Streptomyces sp. WK-5344
BGC0000228.1	0.56	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001897.1	0.55	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0002029.1	0.55	Other	bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C	Streptomyces lunaelactis
BGC0001592.1	0.55	Other	ferroverdin	Streptomyces lunaelactis
BGC0000248.1	0.54	Polyketide	naphtocyclinone	Streptomyces arenae
BGC0000219.1	0.54	Polyketide, Saccharide	elloramycin	Streptomyces olivaceus

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP024935.1 - Region 1 - phosphonate

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Location: 291,584 - 333,308 nt. (total: 41,725 nt) Show pHMM detection rules used

phosphonate: phosphonates

Legend:

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KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.28	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.23	Other	FR-900098	Streptomyces rubellomurinus
BGC0001739.1	0.22	Other	phosphonoacetic Acid	Streptomyces sp. NRRL F-525
BGC0000897.1	0.21	Other	dehydrophos	Streptomyces luridus
BGC0000807.1	0.20	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0001723.1	0.19	Polyketide	oviedomycin	Streptomyces antibioticus
BGC0000234.1	0.17	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000228.1	0.17	Polyketide	granaticin	Streptomyces violaceoruber
BGC0002036.1	0.17	Other	dehydrofosmidomycin	Streptomyces lavendulae
BGC0000231.1	0.17	Polyketide	griseusin	Streptomyces griseus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.61	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.56	Other	FR-900098	Streptomyces rubellomurinus
BGC0001739.1	0.54	Other	phosphonoacetic Acid	Streptomyces sp. NRRL F-525
BGC0000897.1	0.54	Other	dehydrophos	Streptomyces luridus
BGC0000807.1	0.53	Saccharide	phosphonoglycans	Stackebrandtia nassauensis DSM 44728
BGC0001723.1	0.51	Polyketide	oviedomycin	Streptomyces antibioticus
BGC0000234.1	0.49	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000228.1	0.49	Polyketide	granaticin	Streptomyces violaceoruber
BGC0002036.1	0.48	Other	dehydrofosmidomycin	Streptomyces lavendulae
BGC0000231.1	0.48	Polyketide	griseusin	Streptomyces griseus

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP024935.1 - Region 2 - redox-cofactor

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Location: 696,288 - 718,540 nt. (total: 22,253 nt) Show pHMM detection rules used

redox-cofactor: (cds(PF04055 and (TIGR04085 or SPASM)) and (TIGR02111 or TIGR03966) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]))

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core biosynthetic genes

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001120.1	0.20	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000874.1	0.17	Other	blasticidin S	Streptomyces griseochromogenes
BGC0001496.1	0.17	RiPP	actinokineosin	Actinokineospora spheciospongiae
BGC0000518.1	0.16	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000516.1	0.16	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0001783.1	0.15	Other	streptonigrin	Streptomyces flocculus
BGC0000495.1	0.12	RiPP	actagardine	Actinoplanes garbadinensis
BGC0000553.1	0.12	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000496.1	0.12	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000503.1	0.11	RiPP	cinnamycin	Streptomyces cinnamoneus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001120.1	0.52	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000874.1	0.48	Other	blasticidin S	Streptomyces griseochromogenes
BGC0001496.1	0.48	RiPP	actinokineosin	Actinokineospora spheciospongiae
BGC0000518.1	0.46	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736
BGC0000516.1	0.46	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0001783.1	0.44	Other	streptonigrin	Streptomyces flocculus
BGC0000495.1	0.40	RiPP	actagardine	Actinoplanes garbadinensis
BGC0000553.1	0.40	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000496.1	0.40	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000503.1	0.38	RiPP	cinnamycin	Streptomyces cinnamoneus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP024935.1 - Region 3 - hserlactone

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Location: 2,299,446 - 2,320,039 nt. (total: 20,594 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

Legend:

core biosynthetic genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.17	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001120.1	0.17	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001551.1	0.16	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000527.1	0.16	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000554.1	0.48	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001120.1	0.48	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000496.1	0.47	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000551.1	0.46	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000487.1	0.46	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001551.1	0.46	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000527.1	0.46	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP024935.1 - Region 4 - RRE-containing

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Location: 2,373,259 - 2,393,495 nt. (total: 20,237 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002034.1	0.17	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0001589.1	0.17	Saccharide	exopolysaccharides	Burkholderia cenocepacia J2315
BGC0000928.1	0.16	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.16	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0001120.1	0.16	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001588.1	0.16	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000386.1	0.16	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0001659.1	0.15	Terpene	mangicol A	Fusarium equiseti
BGC0000842.1	0.14	Other (Non-NRP beta-lactam)	carbapenem MM4550	Streptomyces argenteolus
BGC0001596.1	0.13	Polyketide	fluostatins M-Q	Streptomyces albus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002034.1	0.49	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0001589.1	0.48	Saccharide	exopolysaccharides	Burkholderia cenocepacia J2315
BGC0000928.1	0.47	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.47	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0001120.1	0.47	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001588.1	0.47	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000386.1	0.47	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0001659.1	0.45	Terpene	mangicol A	Fusarium equiseti
BGC0000842.1	0.43	Other (Non-NRP beta-lactam)	carbapenem MM4550	Streptomyces argenteolus
BGC0001596.1	0.41	Polyketide	fluostatins M-Q	Streptomyces albus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP024935.1 - Region 5 - terpene

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Location: 2,448,679 - 2,467,537 nt. (total: 18,859 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.21	Terpene	carotenoid	Myxococcus xanthus
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0001765.1	0.16	Saccharide	salecan	Agrobacterium tumefaciens
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000519.1	0.15	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001588.1	0.15	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000703.1	0.15	Saccharide	kanamycin	Streptomyces kanamyceticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.53	Terpene	carotenoid	Myxococcus xanthus
BGC0000551.1	0.47	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0001765.1	0.47	Saccharide	salecan	Agrobacterium tumefaciens
BGC0000496.1	0.47	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000513.1	0.47	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000501.1	0.47	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000616.1	0.46	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000519.1	0.46	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001588.1	0.46	Saccharide	exopolysaccharides	Burkholderia pseudomallei 1026b
BGC0000703.1	0.46	Saccharide	kanamycin	Streptomyces kanamyceticus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

NZ_CP024935.1 - Region 6 - terpene

Download region GenBank file

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Location: 2,634,759 - 2,658,958 nt. (total: 24,200 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.32	Terpene	carotenoid	Myxococcus xanthus
BGC0000646.1	0.25	Terpene	β-carotein	uncultured bacterium
BGC0000630.1	0.24	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000640.1	0.23	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000656.1	0.23	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000635.1	0.21	Terpene	carotenoid	Paracoccus sp. N81106
BGC0000642.1	0.21	Terpene	carotenoid	Enterobacteriaceae bacterium DC413
BGC0000641.1	0.21	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000638.1	0.20	Terpene	carotenoid	Pantoea ananatis
BGC0000634.1	0.20	Terpene	carotenoid	Brevundimonas sp. SD212

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.65	Terpene	carotenoid	Myxococcus xanthus
BGC0000646.1	0.58	Terpene	β-carotein	uncultured bacterium
BGC0000630.1	0.57	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000640.1	0.57	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000656.1	0.56	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000635.1	0.54	Terpene	carotenoid	Paracoccus sp. N81106
BGC0000642.1	0.54	Terpene	carotenoid	Enterobacteriaceae bacterium DC413
BGC0000641.1	0.53	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000638.1	0.53	Terpene	carotenoid	Pantoea ananatis
BGC0000634.1	0.53	Terpene	carotenoid	Brevundimonas sp. SD212

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names