GCF_002860805.1_ASM286080v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_PKIB01000002 (original name was: NZ_PKIB01000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	T3PKS	94,907	136,085
Region 12.2	lanthipeptide-class-i	262,886	288,920	suicin 90-1330	RiPP	100%

NZ_PKIB01000007 (original name was: NZ_PKIB01000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RiPP-like	93,585	107,497

Region	Type	From	To	Most similar known cluster	Similarity
Region 12.1	T3PKS	94,907	136,085
Region 12.2	lanthipeptide-class-i	262,886	288,920	suicin 90-1330	RiPP	100%
Region 19.1	RiPP-like	93,585	107,497

No secondary metabolite regions were found in these records:: NZ_PKIB01000001 (original name was: NZ_PKIB01000001.1); NZ_PKIB01000010 (original name was: NZ_PKIB01000010.1); NZ_PKIB01000011 (original name was: NZ_PKIB01000011.1); NZ_PKIB01000012 (original name was: NZ_PKIB01000012.1); NZ_PKIB01000013 (original name was: NZ_PKIB01000013.1); NZ_PKIB01000014 (original name was: NZ_PKIB01000014.1); NZ_PKIB01000015 (original name was: NZ_PKIB01000015.1); NZ_PKIB01000016 (original name was: NZ_PKIB01000016.1); NZ_PKIB01000017 (original name was: NZ_PKIB01000017.1); NZ_PKIB01000018 (original name was: NZ_PKIB01000018.1); NZ_PKIB01000019 (original name was: NZ_PKIB01000019.1); NZ_PKIB01000020 (original name was: NZ_PKIB01000020.1); NZ_PKIB01000021 (original name was: NZ_PKIB01000021.1); NZ_PKIB01000003 (original name was: NZ_PKIB01000003.1); NZ_PKIB01000004 (original name was: NZ_PKIB01000004.1); NZ_PKIB01000005 (original name was: NZ_PKIB01000005.1); NZ_PKIB01000006 (original name was: NZ_PKIB01000006.1); NZ_PKIB01000008 (original name was: NZ_PKIB01000008.1); NZ_PKIB01000009 (original name was: NZ_PKIB01000009.1)

Compact view

c00012_NZ_PKIB.. - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 94,907 - 136,085 nt. (total: 41,179 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001521.1	0.17	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001937.1	0.17	Other	tubercidin	Streptomyces tubercidicus
BGC0000487.1	0.17	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.16	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000527.1	0.16	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001521.1	0.49	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001937.1	0.48	Other	tubercidin	Streptomyces tubercidicus
BGC0000487.1	0.48	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0001526.1	0.47	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.47	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000527.1	0.47	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00012_NZ_PKIB.. - Region 2 - lanthipeptide-class-i

Download region GenBank file

Download region SVG

Location: 262,886 - 288,920 nt. (total: 26,035 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001789.1	0.93	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.66	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.49	RiPP	nisin Q	Lactococcus lactis
BGC0000535.1	0.49	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000538.1	0.44	RiPP	nisin Z	Lactococcus lactis
BGC0001289.1	0.33	RiPP	penisin	Paenibacillus ehimensis
BGC0000544.1	0.30	RiPP	planosporicin	Planomonospora alba
BGC0000560.1	0.28	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.28	RiPP	pep5	Staphylococcus epidermidis
BGC0000549.1	0.26	RiPP	salivaricin D	Streptococcus salivarius

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001789.1	0.98	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.87	RiPP	nisin U	Streptococcus uberis
BGC0000536.1	0.78	RiPP	nisin Q	Lactococcus lactis
BGC0000535.1	0.78	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000538.1	0.75	RiPP	nisin Z	Lactococcus lactis
BGC0001289.1	0.67	RiPP	penisin	Paenibacillus ehimensis
BGC0000544.1	0.64	RiPP	planosporicin	Planomonospora alba
BGC0000560.1	0.61	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.61	RiPP	pep5	Staphylococcus epidermidis
BGC0000549.1	0.59	RiPP	salivaricin D	Streptococcus salivarius

Similar known gene clusters

Lanthipeptide predictions

Lanthipeptide(s) for ctg12_262 - Putative Class I

ctg12_263 leader / core peptide: MNNEDFNLDLVTISKENNSGASPR - VDhbDhaKDhaLCDhbPGCKDhbGILMDhbCAIKDhbADhbCGCHFG

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

ctg12_263 - Class I

Cleavage pHMM score: 27.40

RODEO score: 28

Monoisotopic mass: 2987.5 Da

Molecular weight: 2989.6 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3007.6 Da N = 1; 3025.7 Da N = 2; 3043.7 Da N = 3

c00019_NZ_PKIB.. - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 93,585 - 107,497 nt. (total: 13,913 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.38	RiPP	coagulin	Bacillus coagulans
BGC0001863.1	0.16	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000558.1	0.15	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000624.1	0.15	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001388.1	0.14	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.14	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.14	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000554.1	0.13	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001225.1	0.13	NRP	celesticetin	Streptomyces caelestis
BGC0000561.1	0.11	RiPP	thermophilin 1277	Streptococcus thermophilus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.71	RiPP	coagulin	Bacillus coagulans
BGC0001863.1	0.46	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000624.1	0.46	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001388.1	0.43	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.43	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.43	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000554.1	0.42	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001225.1	0.42	NRP	celesticetin	Streptomyces caelestis
BGC0000561.1	0.37	RiPP	thermophilin 1277	Streptococcus thermophilus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names