GCF_000754995.1_PVA_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_KN150745.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	betalactone	1,844,606	1,870,285
Region 1.2	RiPP-like	2,377,089	2,388,972
Region 1.3	thiopeptide	3,414,467	3,441,007	O-antigen	Saccharide	14%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	betalactone	1,844,606	1,870,285
Region 1.2	RiPP-like	2,377,089	2,388,972
Region 1.3	thiopeptide	3,414,467	3,441,007	O-antigen	Saccharide	14%

No secondary metabolite regions were found in these records:: NZ_KN150746.1

Compact view

NZ_KN150745.1 - Region 1 - betalactone

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Location: 1,844,606 - 1,870,285 nt. (total: 25,680 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.24	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.21	Other	FR-900098	Streptomyces rubellomurinus
BGC0000375.1	0.15	NRP	indigoidine	Streptomyces chromofuscus
BGC0001156.1	0.15	Terpene	platencin	Streptomyces platensis
BGC0001441.1	0.15	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001140.1	0.15	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001928.1	0.15	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000010.1	0.14	Polyketide	aflatoxin	Aspergillus flavus
BGC0001605.1	0.14	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0001131.1	0.14	NRP	ambactin	Xenorhabdus miraniensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.57	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.54	Other	FR-900098	Streptomyces rubellomurinus
BGC0000375.1	0.45	NRP	indigoidine	Streptomyces chromofuscus
BGC0001156.1	0.45	Terpene	platencin	Streptomyces platensis
BGC0001441.1	0.45	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001140.1	0.45	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000010.1	0.44	Polyketide	aflatoxin	Aspergillus flavus
BGC0001605.1	0.44	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0001131.1	0.43	NRP	ambactin	Xenorhabdus miraniensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_KN150745.1 - Region 2 - RiPP-like

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Location: 2,377,089 - 2,388,972 nt. (total: 11,884 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_KN150745.1 - Region 3 - thiopeptide

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Location: 3,414,467 - 3,441,007 nt. (total: 26,541 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000784.1	0.25	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000781.1	0.16	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001973.1	0.13	Other	fervenulin	Streptomyces hiroshimensis
BGC0001972.1	0.13	Other	toxoflavin, fervenulin	Streptomyces hiroshimensis
BGC0001285.1	0.07	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0000981.1	0.06	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E6
BGC0001302.1	0.04	Other	lomofungin	Streptomyces lomondensis
BGC0002012.1	0.04	Polyketide	julichrome Q3-3, julichrome Q3-5	Streptomyces afghaniensis 772
BGC0001283.1	0.04	Polyketide	arsono-polyketide	Streptomyces lividans 1326

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000784.1	0.59	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000781.1	0.47	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001973.1	0.42	Other	fervenulin	Streptomyces hiroshimensis
BGC0001972.1	0.42	Other	toxoflavin, fervenulin	Streptomyces hiroshimensis
BGC0001285.1	0.29	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0000981.1	0.24	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E6
BGC0001302.1	0.20	Other	lomofungin	Streptomyces lomondensis
BGC0002012.1	0.20	Polyketide	julichrome Q3-3, julichrome Q3-5	Streptomyces afghaniensis 772
BGC0001283.1	0.19	Polyketide	arsono-polyketide	Streptomyces lividans 1326

Similar known gene clusters

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Thiopeptides

Core peptide predictions

No core peptides found.