GCF_018380295.1_ASM1838029v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00029_NZ_JAGZ.. (original name was: NZ_JAGZTV010000017.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	RiPP-like	1	8,303

c00054_NZ_JAGZ.. (original name was: NZ_JAGZTV010000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 54.1	NRPS	5,932	49,813	turnerbactin	NRP	30%
Region 54.2	thiopeptide	389,605	415,888	O-antigen	Saccharide	14%

Region	Type	From	To	Most similar known cluster	Similarity
Region 29.1	RiPP-like	1	8,303
Region 54.1	NRPS	5,932	49,813	turnerbactin	NRP	30%
Region 54.2	thiopeptide	389,605	415,888	O-antigen	Saccharide	14%

No secondary metabolite regions were found in these records:: c00001_NZ_JAGZ.. (original name was: NZ_JAGZTV010000050.1); c00002_NZ_JAGZ.. (original name was: NZ_JAGZTV010000037.1); c00003_NZ_JAGZ.. (original name was: NZ_JAGZTV010000038.1); c00004_NZ_JAGZ.. (original name was: NZ_JAGZTV010000039.1); c00005_NZ_JAGZ.. (original name was: NZ_JAGZTV010000004.1); c00006_NZ_JAGZ.. (original name was: NZ_JAGZTV010000051.1); c00007_NZ_JAGZ.. (original name was: NZ_JAGZTV010000040.1); c00008_NZ_JAGZ.. (original name was: NZ_JAGZTV010000005.1); c00009_NZ_JAGZ.. (original name was: NZ_JAGZTV010000041.1); c00010_NZ_JAGZ.. (original name was: NZ_JAGZTV010000006.1); c00011_NZ_JAGZ.. (original name was: NZ_JAGZTV010000042.1); c00012_NZ_JAGZ.. (original name was: NZ_JAGZTV010000052.1); c00013_NZ_JAGZ.. (original name was: NZ_JAGZTV010000043.1); c00014_NZ_JAGZ.. (original name was: NZ_JAGZTV010000007.1); c00015_NZ_JAGZ.. (original name was: NZ_JAGZTV010000044.1); c00016_NZ_JAGZ.. (original name was: NZ_JAGZTV010000045.1); c00017_NZ_JAGZ.. (original name was: NZ_JAGZTV010000008.1); c00018_NZ_JAGZ.. (original name was: NZ_JAGZTV010000009.1); c00019_NZ_JAGZ.. (original name was: NZ_JAGZTV010000053.1); c00020_NZ_JAGZ.. (original name was: NZ_JAGZTV010000054.1); c00021_NZ_JAGZ.. (original name was: NZ_JAGZTV010000010.1); c00022_NZ_JAGZ.. (original name was: NZ_JAGZTV010000011.1); c00023_NZ_JAGZ.. (original name was: NZ_JAGZTV010000046.1); c00024_NZ_JAGZ.. (original name was: NZ_JAGZTV010000012.1); c00025_NZ_JAGZ.. (original name was: NZ_JAGZTV010000013.1); c00026_NZ_JAGZ.. (original name was: NZ_JAGZTV010000014.1); c00027_NZ_JAGZ.. (original name was: NZ_JAGZTV010000015.1); c00028_NZ_JAGZ.. (original name was: NZ_JAGZTV010000016.1); c00030_NZ_JAGZ.. (original name was: NZ_JAGZTV010000018.1); c00031_NZ_JAGZ.. (original name was: NZ_JAGZTV010000055.1); c00032_NZ_JAGZ.. (original name was: NZ_JAGZTV010000019.1); c00033_NZ_JAGZ.. (original name was: NZ_JAGZTV010000020.1); c00034_NZ_JAGZ.. (original name was: NZ_JAGZTV010000021.1); c00035_NZ_JAGZ.. (original name was: NZ_JAGZTV010000022.1); c00036_NZ_JAGZ.. (original name was: NZ_JAGZTV010000056.1); c00037_NZ_JAGZ.. (original name was: NZ_JAGZTV010000023.1); c00038_NZ_JAGZ.. (original name was: NZ_JAGZTV010000024.1); c00039_NZ_JAGZ.. (original name was: NZ_JAGZTV010000001.1); c00040_NZ_JAGZ.. (original name was: NZ_JAGZTV010000047.1); c00041_NZ_JAGZ.. (original name was: NZ_JAGZTV010000025.1); c00042_NZ_JAGZ.. (original name was: NZ_JAGZTV010000057.1); c00043_NZ_JAGZ.. (original name was: NZ_JAGZTV010000026.1); c00044_NZ_JAGZ.. (original name was: NZ_JAGZTV010000027.1); c00045_NZ_JAGZ.. (original name was: NZ_JAGZTV010000048.1); c00046_NZ_JAGZ.. (original name was: NZ_JAGZTV010000028.1); c00047_NZ_JAGZ.. (original name was: NZ_JAGZTV010000029.1); c00048_NZ_JAGZ.. (original name was: NZ_JAGZTV010000030.1); c00049_NZ_JAGZ.. (original name was: NZ_JAGZTV010000031.1); c00050_NZ_JAGZ.. (original name was: NZ_JAGZTV010000002.1); c00051_NZ_JAGZ.. (original name was: NZ_JAGZTV010000032.1); c00052_NZ_JAGZ.. (original name was: NZ_JAGZTV010000033.1); c00053_NZ_JAGZ.. (original name was: NZ_JAGZTV010000034.1); c00055_NZ_JAGZ.. (original name was: NZ_JAGZTV010000049.1); c00056_NZ_JAGZ.. (original name was: NZ_JAGZTV010000035.1); c00057_NZ_JAGZ.. (original name was: NZ_JAGZTV010000036.1)

Compact view

c00029_NZ_JAGZ.. - Region 1 - RiPP-like

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Location: 1 - 8,303 nt. (total: 8,303 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00054_NZ_JAGZ.. - Region 1 - NRPS

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Location: 5,932 - 49,813 nt. (total: 43,882 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001185.1	0.36	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0000401.1	0.30	NRP	paenibactin	Paenibacillus elgii B69
BGC0001132.1	0.25	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001833.1	0.24	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000228.1	0.23	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001758.1	0.23	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001149.1	0.23	NRP, Saccharide	brabantamide A	Pseudomonas sp. SHC52
BGC0002008.1	0.23	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0001302.1	0.23	Other	lomofungin	Streptomyces lomondensis
BGC0000836.1	0.23	Other	APE Ec	Escherichia coli CFT073

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001185.1	0.69	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0000401.1	0.64	NRP	paenibactin	Paenibacillus elgii B69
BGC0001132.1	0.58	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001833.1	0.58	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000228.1	0.56	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001758.1	0.56	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001149.1	0.56	NRP, Saccharide	brabantamide A	Pseudomonas sp. SHC52
BGC0002008.1	0.56	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0001302.1	0.56	Other	lomofungin	Streptomyces lomondensis
BGC0000836.1	0.56	Other	APE Ec	Escherichia coli CFT073

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 5931 - 49813:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg54_23

Search NORINE for peptide: strict or relaxed

AMP-binding (461..862): ser

NRPSPredictor2: ser

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg54_30

Search NORINE for peptide: strict or relaxed

AMP-binding (33..436): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: AMPsQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 90% (moderate)

c00054_NZ_JAGZ.. - Region 2 - thiopeptide

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Location: 389,605 - 415,888 nt. (total: 26,284 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000784.1	0.25	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001361.1	0.23	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000781.1	0.16	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001285.1	0.12	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0000981.1	0.07	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E6
BGC0001302.1	0.07	Other	lomofungin	Streptomyces lomondensis
BGC0002012.1	0.06	Polyketide	julichrome Q3-3, julichrome Q3-5	Streptomyces afghaniensis 772
BGC0001956.1	0.06	Polyketide	miharamycin A, miharamycin B	Streptomyces miharaensis
BGC0001283.1	0.06	Polyketide	arsono-polyketide	Streptomyces lividans 1326
BGC0000414.1	0.05	NRP	quinocarcin	Streptomyces melanovinaceus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000784.1	0.58	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001361.1	0.56	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000781.1	0.47	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0001285.1	0.39	Other (Fatty acid)	pseudopyronine A, pseudopyronine B	Pseudomonas putida
BGC0000981.1	0.28	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E6
BGC0001302.1	0.28	Other	lomofungin	Streptomyces lomondensis
BGC0002012.1	0.26	Polyketide	julichrome Q3-3, julichrome Q3-5	Streptomyces afghaniensis 772
BGC0001956.1	0.25	Polyketide	miharamycin A, miharamycin B	Streptomyces miharaensis
BGC0001283.1	0.25	Polyketide	arsono-polyketide	Streptomyces lividans 1326
BGC0000414.1	0.23	NRP	quinocarcin	Streptomyces melanovinaceus

Similar known gene clusters

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Thiopeptides

Core peptide predictions

No core peptides found.