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Overview
12.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_PNHV01000006 (original name was: NZ_PNHV01000006.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | RRE-containing | 48,985 | 69,272 | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Other | 9%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 12.1 | RRE-containing | 48,985 | 69,272 | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Other | 9%

No secondary metabolite regions were found in these records:
  NZ_PNHV01000001 (original name was: NZ_PNHV01000001.1)
  NZ_PNHV01000010 (original name was: NZ_PNHV01000010.1)
  NZ_PNHV01000011 (original name was: NZ_PNHV01000011.1)
  NZ_PNHV01000012 (original name was: NZ_PNHV01000012.1)
  NZ_PNHV01000013 (original name was: NZ_PNHV01000013.1)
  NZ_PNHV01000014 (original name was: NZ_PNHV01000014.1)
  NZ_PNHV01000015 (original name was: NZ_PNHV01000015.1)
  NZ_PNHV01000002 (original name was: NZ_PNHV01000002.1)
  NZ_PNHV01000003 (original name was: NZ_PNHV01000003.1)
  NZ_PNHV01000004 (original name was: NZ_PNHV01000004.1)
  NZ_PNHV01000005 (original name was: NZ_PNHV01000005.1)
  NZ_PNHV01000007 (original name was: NZ_PNHV01000007.1)
  NZ_PNHV01000008 (original name was: NZ_PNHV01000008.1)
  NZ_PNHV01000009 (original name was: NZ_PNHV01000009.1)

Compact view
c00012_NZ_PNHV.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 48,985 - 69,272 nt. (total: 20,288 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
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Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001551.1 |  | 0.24 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001645.1 |  | 0.17 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0000504.1 |  | 0.17 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001549.1 |  | 0.17 | RiPP | citrulassin B | Streptomyces aurantiacus JA 4570
BGC0001779.1 |  | 0.17 | RiPP | siamycin | Streptomyces nodosus
BGC0001894.1 |  | 0.16 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0001176.1 |  | 0.16 | RiPP | streptomonomicin | Streptomonospora alba
BGC0000764.1 |  | 0.16 | Saccharide | exopolysaccharide | Lactococcus lactis
BGC0001550.1 |  | 0.16 | RiPP | citrulassin D | Streptomyces katrae
BGC0001552.1 |  | 0.16 | RiPP | citrulassin F | Streptomyces avermitilis MA-4680 = NBRC 14893

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001551.1 |  | 0.57 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0001645.1 |  | 0.48 | RiPP | lagmysin | Streptomyces sp. NRRL S-118
BGC0000504.1 |  | 0.48 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001549.1 |  | 0.48 | RiPP | citrulassin B | Streptomyces aurantiacus JA 4570
BGC0001779.1 |  | 0.48 | RiPP | siamycin | Streptomyces nodosus
BGC0001894.1 |  | 0.47 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0001176.1 |  | 0.47 | RiPP | streptomonomicin | Streptomonospora alba
BGC0000764.1 |  | 0.47 | Saccharide | exopolysaccharide | Lactococcus lactis
BGC0001550.1 |  | 0.47 | RiPP | citrulassin D | Streptomyces katrae
BGC0001552.1 |  | 0.47 | RiPP | citrulassin F | Streptomyces avermitilis MA-4680 = NBRC 14893

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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