GCF_000182965.3_ASM18296v3_genomic - 2 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_032089.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS-like	568,902	613,116

NC_032090.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	terpene	1,741,816	1,763,162

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	NRPS-like	568,902	613,116
Region 2.1	terpene	1,741,816	1,763,162

No secondary metabolite regions were found in these records:: NC_032091.1; NC_032092.1; NC_032093.1; NC_032094.1; NC_032095.1; NC_032096.1

Compact view

NC_032089.1 - Region 1 - NRPS-like

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Location: 568,902 - 613,116 nt. (total: 44,215 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001900.1	0.20	NRP	fragin	Burkholderia cenocepacia H111
BGC0001168.1	0.20	NRP	livipeptin	Streptomyces lividans 1326
BGC0000334.1	0.18	NRP	cyclosporine	Tolypocladium inflatum NRRL8044
BGC0001758.1	0.17	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001479.1	0.17	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001641.1	0.17	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.17	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.17	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001873.1	0.17	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0001833.1	0.17	NRP	icosalide A, icosalide B	Burkholderia gladioli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001900.1	0.53	NRP	fragin	Burkholderia cenocepacia H111
BGC0001168.1	0.52	NRP	livipeptin	Streptomyces lividans 1326
BGC0000334.1	0.49	NRP	cyclosporine	Tolypocladium inflatum NRRL8044
BGC0001758.1	0.48	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001479.1	0.48	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001641.1	0.48	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.48	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.48	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001873.1	0.48	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0001833.1	0.48	NRP	icosalide A, icosalide B	Burkholderia gladioli

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 568901 - 613116:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_371

Search NORINE for peptide: strict or relaxed

AMP-binding (235..705): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPRHfvmrsK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

NC_032090.1 - Region 1 - terpene

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Location: 1,741,816 - 1,763,162 nt. (total: 21,347 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001839.1	0.38	Terpene	squalestatin S1	Aspergillus sp. Z5
BGC0001973.1	0.13	Other	fervenulin	Streptomyces hiroshimensis
BGC0001972.1	0.13	Other	toxoflavin, fervenulin	Streptomyces hiroshimensis
BGC0001339.1	0.03	Polyketide	squalestatin S1	Phoma sp. MF5453

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001839.1	0.70	Terpene	squalestatin S1	Aspergillus sp. Z5
BGC0001973.1	0.42	Other	fervenulin	Streptomyces hiroshimensis
BGC0001972.1	0.42	Other	toxoflavin, fervenulin	Streptomyces hiroshimensis
BGC0001339.1	0.16	Polyketide	squalestatin S1	Phoma sp. MF5453

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names