GCF_002277935.1_ASM227793v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP022930.1

Region	Type	From	To
Region 1.1	RiPP-like	491,317	503,479
Region 1.2	cyclic-lactone-autoinducer	671,577	692,179
Region 1.3	terpene	914,188	935,078
Region 1.4	T3PKS	2,036,087	2,077,241

Region	Type	From	To	Similarity
Region 1.1	RiPP-like	491,317	503,479
Region 1.2	cyclic-lactone-autoinducer	671,577	692,179
Region 1.3	terpene	914,188	935,078
Region 1.4	T3PKS	2,036,087	2,077,241

No secondary metabolite regions were found in these records:: NZ_CP022931.1

Compact view

NZ_CP022930.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 491,317 - 503,479 nt. (total: 12,163 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.20	RiPP	coagulin	Bacillus coagulans
BGC0001862.1	0.16	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.16	RiPP	pallidocin	Aeribacillus pallidus
BGC0001863.1	0.16	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000558.1	0.16	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001861.1	0.16	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000484.1	0.15	RiPP	glycocin F	Lactobacillus plantarum
BGC0001388.1	0.15	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.15	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.15	RiPP	gassericin-T	Lactobacillus gasseri

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.53	RiPP	coagulin	Bacillus coagulans
BGC0001862.1	0.47	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.47	RiPP	pallidocin	Aeribacillus pallidus
BGC0001863.1	0.46	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001861.1	0.46	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0000484.1	0.46	RiPP	glycocin F	Lactobacillus plantarum
BGC0001388.1	0.45	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.45	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.45	RiPP	gassericin-T	Lactobacillus gasseri

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP022930.1 - Region 2 - cyclic-lactone-autoinducer

Download region GenBank file

Download region SVG

Location: 671,577 - 692,179 nt. (total: 20,603 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.18	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000494.1	0.16	RiPP	uberolysin	Streptococcus uberis
BGC0000804.1	0.14	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656
BGC0000540.1	0.12	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000624.1	0.09	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001133.1	0.08	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001510.1	0.07	Other	anisomycin	Streptomyces hygrospinosus
BGC0001728.1	0.03	NRP, Polyketide	paenilipoheptin	Paenibacillus polymyxa E681
BGC0001011.1	0.03	NRP, Polyketide	meridamycin	Streptomyces sp. NRRL 30748

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.50	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000494.1	0.46	RiPP	uberolysin	Streptococcus uberis
BGC0000804.1	0.44	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656
BGC0000540.1	0.40	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000624.1	0.32	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001133.1	0.30	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001510.1	0.27	Other	anisomycin	Streptomyces hygrospinosus
BGC0001728.1	0.17	NRP, Polyketide	paenilipoheptin	Paenibacillus polymyxa E681
BGC0001011.1	0.16	NRP, Polyketide	meridamycin	Streptomyces sp. NRRL 30748

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP022930.1 - Region 3 - terpene

Download region GenBank file

Download region SVG

Location: 914,188 - 935,078 nt. (total: 20,891 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.33	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000758.1	0.26	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000648.1	0.21	Terpene	carotenoid	Myxococcus xanthus
BGC0000630.1	0.20	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000656.1	0.19	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000640.1	0.19	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0001579.1	0.18	RiPP	duramycin	Streptomyces cinnamoneus
BGC0001364.1	0.17	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919
BGC0001660.1	0.17	RiPP	mathermycin	Marinactinospora thermotolerans
BGC0000646.1	0.17	Terpene	β-carotein	uncultured bacterium

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.67	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000758.1	0.60	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000648.1	0.54	Terpene	carotenoid	Myxococcus xanthus
BGC0000630.1	0.52	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000656.1	0.51	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000640.1	0.51	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0001579.1	0.49	RiPP	duramycin	Streptomyces cinnamoneus
BGC0001364.1	0.49	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919
BGC0001660.1	0.49	RiPP	mathermycin	Marinactinospora thermotolerans
BGC0000646.1	0.49	Terpene	β-carotein	uncultured bacterium

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP022930.1 - Region 4 - T3PKS

Download region GenBank file

Download region SVG

Location: 2,036,087 - 2,077,241 nt. (total: 41,155 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.23	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000255.1	0.20	Polyketide	pederin	Uncultured bacterium
BGC0000886.1	0.20	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000866.1	0.18	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0000867.1	0.17	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0001779.1	0.16	RiPP	siamycin	Streptomyces nodosus
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001120.1	0.16	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000561.1	0.16	RiPP	thermophilin 1277	Streptococcus thermophilus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.56	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000255.1	0.52	Polyketide	pederin	Uncultured bacterium
BGC0000886.1	0.52	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000866.1	0.49	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0000867.1	0.49	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0001779.1	0.47	RiPP	siamycin	Streptomyces nodosus
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000539.1	0.47	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001120.1	0.47	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000561.1	0.47	RiPP	thermophilin 1277	Streptococcus thermophilus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names