GCF_000429265.1_ASM42926v1_genomic - 6 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AUBN01000003 (original name was: NZ_AUBN01000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	thiopeptide	316,907	348,302

NZ_KE386872.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	thiopeptide	270,415	300,502

NZ_AUBN01000010 (original name was: NZ_AUBN01000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	NRPS	61,666	106,924	Sch-47554 / Sch-47555	Polyketide	3%

NZ_AUBN01000016 (original name was: NZ_AUBN01000016.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	lanthipeptide-class-iii	1	19,928

NZ_AUBN01000017 (original name was: NZ_AUBN01000017.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	arylpolyene,NRPS	1	64,649	thiazostatin / watasemycin A / watasemycin B / 2-hydroxyphenylthiazoline enantiopyochelin / isopyochelin	NRP	20%

NZ_AUBN01000020 (original name was: NZ_AUBN01000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	thiopeptide	1	19,196

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	thiopeptide	316,907	348,302
Region 3.1	thiopeptide	270,415	300,502
Region 7.1	NRPS	61,666	106,924	Sch-47554 / Sch-47555	Polyketide	3%
Region 13.1	lanthipeptide-class-iii	1	19,928
Region 14.1	arylpolyene,NRPS	1	64,649	thiazostatin / watasemycin A / watasemycin B / 2-hydroxyphenylthiazoline enantiopyochelin / isopyochelin	NRP	20%
Region 17.1	thiopeptide	1	19,196

No secondary metabolite regions were found in these records:: NZ_KE386871.1; NZ_AUBN01000006 (original name was: NZ_AUBN01000006.1); NZ_KE386873.1; NZ_AUBN01000009 (original name was: NZ_AUBN01000009.1); NZ_AUBN01000011 (original name was: NZ_AUBN01000011.1); NZ_AUBN01000012 (original name was: NZ_AUBN01000012.1); NZ_AUBN01000013 (original name was: NZ_AUBN01000013.1); NZ_AUBN01000014 (original name was: NZ_AUBN01000014.1); NZ_AUBN01000015 (original name was: NZ_AUBN01000015.1); NZ_AUBN01000018 (original name was: NZ_AUBN01000018.1); NZ_AUBN01000019 (original name was: NZ_AUBN01000019.1); NZ_AUBN01000021 (original name was: NZ_AUBN01000021.1); NZ_AUBN01000022 (original name was: NZ_AUBN01000022.1); NZ_AUBN01000023 (original name was: NZ_AUBN01000023.1); NZ_AUBN01000024 (original name was: NZ_AUBN01000024.1); NZ_AUBN01000025 (original name was: NZ_AUBN01000025.1); NZ_AUBN01000026 (original name was: NZ_AUBN01000026.1); NZ_AUBN01000027 (original name was: NZ_AUBN01000027.1); NZ_AUBN01000028 (original name was: NZ_AUBN01000028.1); NZ_AUBN01000029 (original name was: NZ_AUBN01000029.1); NZ_AUBN01000030 (original name was: NZ_AUBN01000030.1); NZ_AUBN01000031 (original name was: NZ_AUBN01000031.1)

Compact view

c00002_NZ_AUBN.. - Region 1 - thiopeptide

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Location: 316,907 - 348,302 nt. (total: 31,396 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000513.1	0.18	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000551.1	0.17	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.17	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000571.1	0.17	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001173.1	0.16	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.16	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001311.1	0.16	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000563.1	0.16	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001779.1	0.16	RiPP	siamycin	Streptomyces nodosus
BGC0001551.1	0.16	RiPP	citrulassin E	Streptomyces glaucescens

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000513.1	0.49	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000551.1	0.48	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.48	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000571.1	0.48	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001173.1	0.47	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.47	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001311.1	0.47	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000563.1	0.47	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001779.1	0.47	RiPP	siamycin	Streptomyces nodosus
BGC0001551.1	0.47	RiPP	citrulassin E	Streptomyces glaucescens

Similar known gene clusters

No matches found.

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Thiopeptides

Core peptide predictions

No core peptides found.

NZ_KE386872.1 - Region 1 - thiopeptide

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Location: 270,415 - 300,502 nt. (total: 30,088 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000607.1	0.23	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0002013.1	0.20	RiPP	curacozole	Streptomyces curacoi
BGC0001174.1	0.15	RiPP	corynazolicin	Corynebacterium urealyticum DSM 7111
BGC0001783.1	0.15	Other	streptonigrin	Streptomyces flocculus
BGC0001928.1	0.15	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001605.1	0.15	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0001150.1	0.14	Polyketide	pamamycin-607	Streptomyces alboniger
BGC0001917.1	0.14	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0000243.1	0.14	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000207.1	0.14	Polyketide	chartreusin	Streptomyces chartreusis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000607.1	0.56	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0002013.1	0.52	RiPP	curacozole	Streptomyces curacoi
BGC0001174.1	0.45	RiPP	corynazolicin	Corynebacterium urealyticum DSM 7111
BGC0001783.1	0.45	Other	streptonigrin	Streptomyces flocculus
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001605.1	0.45	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0001150.1	0.44	Polyketide	pamamycin-607	Streptomyces alboniger
BGC0001917.1	0.44	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0000243.1	0.44	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0000207.1	0.44	Polyketide	chartreusin	Streptomyces chartreusis

Similar known gene clusters

No matches found.

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Thiopeptides

Core peptide predictions

No core peptides found.

c00007_NZ_AUBN.. - Region 1 - NRPS

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Location: 61,666 - 106,924 nt. (total: 45,259 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000889.1	0.27	Other	bagremycin A, bagremycin B	Streptomyces sp. WK-5344
BGC0001399.1	0.26	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000357.1	0.25	NRP	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0002029.1	0.24	Other	bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C	Streptomyces lunaelactis
BGC0001592.1	0.24	Other	ferroverdin	Streptomyces lunaelactis
BGC0000343.1	0.24	NRP	enterobactin	Pseudomonas sp. J465
BGC0001831.1	0.23	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001615.1	0.21	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0000417.1	0.21	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000457.1	0.21	NRP	vicibactin	Rhizobium etli CFN 42

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000889.1	0.60	Other	bagremycin A, bagremycin B	Streptomyces sp. WK-5344
BGC0001399.1	0.59	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000357.1	0.58	NRP	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0002029.1	0.58	Other	bagremycin A, bagremycin B, bagremycin C, bagremycin E, bagremycin F, bagremycin G, ferroverdin A, ferroverdin B, ferroverdin C	Streptomyces lunaelactis
BGC0001592.1	0.58	Other	ferroverdin	Streptomyces lunaelactis
BGC0000343.1	0.57	NRP	enterobactin	Pseudomonas sp. J465
BGC0001831.1	0.56	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001615.1	0.54	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0000417.1	0.54	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000457.1	0.54	NRP	vicibactin	Rhizobium etli CFN 42

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 61665 - 106924:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg7_67

CAL_domain (128..433): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 14.4
AHBA: 8.9
shikimic_acid: 0.0
NH2: 0.0
Acetyl-CoA: 0.0

ctg7_69

Search NORINE for peptide: strict or relaxed

AMP-binding (279..677): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLsKVGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

c00013_NZ_AUBN.. - Region 1 - lanthipeptide-class-iii

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Location: 1 - 19,928 nt. (total: 19,928 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001579.1	0.24	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000554.1	0.22	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000519.1	0.22	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000501.1	0.22	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000496.1	0.21	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000553.1	0.21	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000504.1	0.20	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000500.1	0.20	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000563.1	0.19	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000518.1	0.19	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001579.1	0.57	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000554.1	0.55	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000519.1	0.55	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000501.1	0.55	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000496.1	0.54	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000553.1	0.54	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000504.1	0.52	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000500.1	0.52	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000563.1	0.52	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000518.1	0.51	RiPP	informatipeptin	Streptomyces viridochromogenes DSM 40736

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

No core peptides found.

c00014_NZ_AUBN.. - Region 1 - NRPS,arylpolyene

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Location: 1 - 64,649 nt. (total: 64,649 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002008.1	0.89	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000836.1	0.88	Other	APE Ec	Escherichia coli CFT073
BGC0001050.1	0.86	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0001075.1	0.85	Terpene, Polyketide	aurachin RE	Rhodococcus erythropolis
BGC0001343.1	0.83	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001897.1	0.81	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001909.1	0.80	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001399.1	0.77	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000204.1	0.74	Polyketide	benastatin A, benastatin B, BE-43767, TAN1532B	Streptomyces sp. A2991200
BGC0000389.1	0.72	NRP	massetolide A	Pseudomonas fluorescens SS101

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001050.1	0.66	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0001909.1	0.66	Polyketide	strobilurin	Strobilurus tenacellus
BGC0000373.1	0.64	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0002008.1	0.63	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000836.1	0.63	Other	APE Ec	Escherichia coli CFT073
BGC0001075.1	0.62	Terpene, Polyketide	aurachin RE	Rhodococcus erythropolis
BGC0000873.1	0.61	Other	A-201A	Saccharothrix mutabilis subsp. capreolus
BGC0001104.1	0.61	NRP, Polyketide	myxovirescin A1	Myxococcus xanthus DK 1622
BGC0001897.1	0.61	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001023.1	0.60	NRP, Polyketide	myxochromide S1	Stigmatella aurantiaca

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 64649:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 2 - 29934:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 13054 - 64649:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_4

PKS_AT (8..293): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 93.2
Methylmalonyl-CoA: 35.4
inactive: 34.3
Methoxymalonyl-CoA: 32.9
Propionyl-CoA: 23.2
CHC-CoA: 14.1
Acetyl-CoA: 13.5
trans-1,2-CPDA: 10.8
fatty_acid: 10.0
Ethylmalonyl-CoA: 9.1
2-Methylbutyryl-CoA: 8.7
Isobutyryl-CoA: 0.0
Benzoyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg14_8

Search NORINE for peptide: strict or relaxed

AMP-binding (422..818): X

NRPSPredictor2: gly, ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlLVMGiiwK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 60% (weak)

ctg14_27

Search NORINE for peptide: strict or relaxed

AMP-binding (46..451): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: dhb, sal
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: nwhgaGmIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 40% (weak)

ctg14_32

Search NORINE for peptide: strict or relaxed

AMP-binding (565..964): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

ctg14_34

Search NORINE for peptide: strict or relaxed

AMP-binding (583..975): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNvSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

c00017_NZ_AUBN.. - Region 1 - thiopeptide

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Location: 1 - 19,196 nt. (total: 19,196 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Thiopeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001146.1	0.21	RiPP	cyclothiazomycin C	Streptomyces sp. NRRL WC-3908
BGC0001174.1	0.21	RiPP	corynazolicin	Corynebacterium urealyticum DSM 7111
BGC0000606.1	0.18	RiPP	lactazole	Streptomyces lactacystinaeus
BGC0001472.1	0.17	RiPP	berninamycin A	Streptomyces bernensis
BGC0001145.1	0.17	RiPP	cyclothiazomycin b1	Streptomyces mobaraensis NBRC 13819 = DSM 40847
BGC0000615.1	0.16	RiPP	TP-1161	Nocardiopsis sp. TFS65-07
BGC0000613.1	0.14	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0001860.1	0.14	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000603.1	0.14	RiPP	cyclothiazomycin	Streptomyces hygroscopicus
BGC0000569.1	0.14	RiPP	plantazolicin	Bacillus velezensis FZB42

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001146.1	0.54	RiPP	cyclothiazomycin C	Streptomyces sp. NRRL WC-3908
BGC0001174.1	0.53	RiPP	corynazolicin	Corynebacterium urealyticum DSM 7111
BGC0000606.1	0.50	RiPP	lactazole	Streptomyces lactacystinaeus
BGC0001472.1	0.49	RiPP	berninamycin A	Streptomyces bernensis
BGC0001145.1	0.48	RiPP	cyclothiazomycin b1	Streptomyces mobaraensis NBRC 13819 = DSM 40847
BGC0000615.1	0.47	RiPP	TP-1161	Nocardiopsis sp. TFS65-07
BGC0000613.1	0.44	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0001860.1	0.43	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000603.1	0.43	RiPP	cyclothiazomycin	Streptomyces hygroscopicus
BGC0000569.1	0.43	RiPP	plantazolicin	Bacillus velezensis FZB42

Similar known gene clusters

No matches found.

Thiopeptide predictions

No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Thiopeptides

Core peptide predictions

No core peptides found.