GCF_002370195.2_ASM237019v2_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AP018335.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T3PKS	886,965	928,047	salecan	Saccharide	10%
Region 2	terpene	1,993,558	2,014,385
Region 3	betalactone	2,108,499	2,132,769	fengycin	NRP	46%
Region 4	cyclic-lactone-autoinducer	2,513,423	2,532,743
Region 5	cyclic-lactone-autoinducer	2,976,947	2,997,477	herboxidiene	Polyketide	2%

NZ_AP018335.1 - Region 1 - T3PKS

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Location: 886,965 - 928,047 nt. (total: 41,083 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.34	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001938.1	0.31	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001962.1	0.31	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001526.1	0.22	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001831.1	0.22	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001861.1	0.21	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0001483.1	0.21	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0001525.1	0.21	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001862.1	0.20	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.20	RiPP	pallidocin	Aeribacillus pallidus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.67	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001938.1	0.65	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001962.1	0.64	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001526.1	0.55	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001831.1	0.55	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001861.1	0.54	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0001483.1	0.54	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0001525.1	0.53	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001862.1	0.53	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.53	RiPP	pallidocin	Aeribacillus pallidus

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NZ_AP018335.1 - Region 2 - terpene

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Location: 1,993,558 - 2,014,385 nt. (total: 20,828 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000851.1	0.10	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0001418.1	0.04	NRP, Polyketide	myxochromide D	Hyalangium minutum
BGC0001419.1	0.04	NRP, Polyketide	myxochromide D	Hyalangium minutum
BGC0001215.1	0.04	NRP	conglobatin	Streptomyces conglobatus
BGC0000727.1	0.04	Saccharide	indigoidine	Streptomyces aureofaciens
BGC0000340.1	0.03	NRP	echoside A, echoside B, echoside C, echoside D, echoside E	Streptomyces sp. LZ35

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000851.1	0.36	Other	albonoursin	Streptomyces noursei ATCC 11455
BGC0001418.1	0.19	NRP, Polyketide	myxochromide D	Hyalangium minutum
BGC0001419.1	0.19	NRP, Polyketide	myxochromide D	Hyalangium minutum
BGC0001215.1	0.18	NRP	conglobatin	Streptomyces conglobatus
BGC0000727.1	0.17	Saccharide	indigoidine	Streptomyces aureofaciens
BGC0000340.1	0.17	NRP	echoside A, echoside B, echoside C, echoside D, echoside E	Streptomyces sp. LZ35

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_AP018335.1 - Region 3 - betalactone

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Location: 2,108,499 - 2,132,769 nt. (total: 24,271 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000234.1	0.21	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000649.1	0.20	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001897.1	0.18	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0000260.1	0.17	Polyketide	prodigiosin	Hahella chejuensis KCTC 2396
BGC0000706.1	0.16	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001103.1	0.15	NRP, Polyketide	mycosubtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0002009.1	0.15	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0002034.1	0.14	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0000774.1	0.14	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001343.1	0.14	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000234.1	0.53	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000649.1	0.53	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001897.1	0.49	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0000260.1	0.48	Polyketide	prodigiosin	Hahella chejuensis KCTC 2396
BGC0000706.1	0.46	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0001103.1	0.45	NRP, Polyketide	mycosubtilin	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0002009.1	0.45	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0002034.1	0.44	Other	perquinoline A, perquinoline B, perquinoline C	Streptomyces sp. IB2014 016-6
BGC0000774.1	0.44	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001343.1	0.44	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_AP018335.1 - Region 4 - cyclic-lactone-autoinducer

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Location: 2,513,423 - 2,532,743 nt. (total: 19,321 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.17	RiPP	circularin A	Clostridium beijerinckii
BGC0000294.1	0.17	NRP	acinetobactin	Acinetobacter baumannii
BGC0001289.1	0.16	RiPP	penisin	Paenibacillus ehimensis
BGC0000571.1	0.16	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0001494.1	0.15	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0002009.1	0.15	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0000584.1	0.15	RiPP	colicin V	Escherichia coli
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000802.1	0.14	Saccharide	succinoglycan	Sinorhizobium meliloti

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.48	RiPP	circularin A	Clostridium beijerinckii
BGC0000294.1	0.48	NRP	acinetobactin	Acinetobacter baumannii
BGC0001289.1	0.47	RiPP	penisin	Paenibacillus ehimensis
BGC0000571.1	0.47	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans
BGC0001494.1	0.45	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0002009.1	0.45	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0000584.1	0.45	RiPP	colicin V	Escherichia coli
BGC0001928.1	0.44	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000802.1	0.44	Saccharide	succinoglycan	Sinorhizobium meliloti

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_AP018335.1 - Region 5 - cyclic-lactone-autoinducer

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Location: 2,976,947 - 2,997,477 nt. (total: 20,531 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000943.1	0.07	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000947.1	0.07	Other	vibrioferrin	Vibrio alginolyticus
BGC0001870.1	0.07	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0001767.1	0.06	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001796.1	0.06	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0001211.1	0.06	NRP	albachelin	Amycolatopsis alba DSM 44262
BGC0000423.1	0.06	NRP	scabichelin	Streptomyces scabiei 87.22
BGC0000349.1	0.06	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0000708.1	0.04	Saccharide	lividomycin	Streptomyces lividus
BGC0000699.1	0.04	Saccharide	hygromycin A	Streptomyces hygroscopicus subsp. hygroscopicus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000943.1	0.28	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000947.1	0.28	Other	vibrioferrin	Vibrio alginolyticus
BGC0001870.1	0.27	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0001767.1	0.26	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001796.1	0.25	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0001211.1	0.25	NRP	albachelin	Amycolatopsis alba DSM 44262
BGC0000423.1	0.25	NRP	scabichelin	Streptomyces scabiei 87.22
BGC0000349.1	0.25	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0000708.1	0.21	Saccharide	lividomycin	Streptomyces lividus
BGC0000699.1	0.20	Saccharide	hygromycin A	Streptomyces hygroscopicus subsp. hygroscopicus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names