GCF_017894345.1_ASM1789434v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP059276.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	616,391	629,707	gassericin T	RiPP	77%
Region 1.2	LAP	1,513,357	1,536,418
Region 1.3	lanthipeptide-class-iv	1,742,389	1,764,959

No secondary metabolite regions were found in these records:: NZ_CP059277.1; NZ_CP059278.1

Compact view

NZ_CP059276.1 - Region 1 - RiPP-like

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Location: 616,391 - 629,707 nt. (total: 13,317 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000619.1	0.34	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.34	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.34	RiPP	gassericin E	Lactobacillus gasseri
BGC0000617.1	0.32	RiPP	coagulin	Bacillus coagulans
BGC0000624.1	0.20	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000558.1	0.15	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000797.1	0.14	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0000768.1	0.14	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000619.1	0.67	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.67	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.67	RiPP	gassericin E	Lactobacillus gasseri
BGC0000617.1	0.65	RiPP	coagulin	Bacillus coagulans
BGC0000624.1	0.52	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001928.1	0.44	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000797.1	0.43	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0000768.1	0.43	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000294.1	0.43	NRP	acinetobactin	Acinetobacter baumannii

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP059276.1 - Region 2 - LAP

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Location: 1,513,357 - 1,536,418 nt. (total: 23,062 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000569.1	0.20	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001222.1	0.15	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000566.1	0.15	RiPP	streptolysin S	Streptococcus pyogenes M1 GAS
BGC0000491.1	0.15	RiPP	gassericin A	Lactobacillus gasseri
BGC0001618.1	0.15	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000766.1	0.15	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000486.1	0.15	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000765.1	0.15	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000605.1	0.14	RiPP	GE37468	Streptomyces sp. ATCC 55365
BGC0000803.1	0.14	Saccharide	GG exopolysaccharide	Lactobacillus rhamnosus GG

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000569.1	0.52	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000566.1	0.46	RiPP	streptolysin S	Streptococcus pyogenes M1 GAS
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0001618.1	0.46	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000766.1	0.45	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000486.1	0.45	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000765.1	0.45	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000605.1	0.44	RiPP	GE37468	Streptomyces sp. ATCC 55365
BGC0000803.1	0.44	Saccharide	GG exopolysaccharide	Lactobacillus rhamnosus GG

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP059276.1 - Region 3 - lanthipeptide-class-iv

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Location: 1,742,389 - 1,764,959 nt. (total: 22,571 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000501.1	0.26	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000551.1	0.26	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.25	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000554.1	0.20	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.20	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001210.1	0.19	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000626.1	0.19	RiPP	thuricin	Bacillus thuringiensis
BGC0000504.1	0.19	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000500.1	0.19	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000539.1	0.19	RiPP	nukacin ISK-1	Staphylococcus warneri

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000501.1	0.59	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000551.1	0.59	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.59	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000554.1	0.53	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.52	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001210.1	0.52	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000626.1	0.52	RiPP	thuricin	Bacillus thuringiensis
BGC0000504.1	0.51	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000500.1	0.51	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000539.1	0.51	RiPP	nukacin ISK-1	Staphylococcus warneri

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

No core peptides found.