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Overview
2.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JH591188.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | ranthipeptide | 559,751 | 581,471 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | ranthipeptide | 559,751 | 581,471 |

No secondary metabolite regions were found in these records:
  NZ_JH591187.1
  NZ_JH591189.1
  NZ_JH591190.1
  NZ_JH591191.1
  NZ_JH591192.1
  NZ_JH591193.1
  NZ_JH591194.1
  NZ_JH591195.1
  NZ_JH591196.1
  NZ_JH591197.1
  NZ_JH591198.1
  NZ_JH591199.1
  NZ_JH591200.1

Compact view
NZ_JH591188.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 559,751 - 581,471 nt. (total: 21,721 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
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Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000602.1 |  | 0.21 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000601.1 |  | 0.19 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000599.1 |  | 0.18 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001222.1 |  | 0.16 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.16 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001289.1 |  | 0.15 | RiPP | penisin | Paenibacillus ehimensis
BGC0001494.1 |  | 0.15 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306
BGC0000616.1 |  | 0.15 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001743.1 |  | 0.15 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0001138.1 |  | 0.14 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000602.1 |  | 0.53 | RiPP | subtilosin A | Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000601.1 |  | 0.50 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000599.1 |  | 0.50 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0001222.1 |  | 0.47 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.47 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001289.1 |  | 0.46 | RiPP | penisin | Paenibacillus ehimensis
BGC0001494.1 |  | 0.46 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306
BGC0000616.1 |  | 0.45 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0001743.1 |  | 0.45 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0001138.1 |  | 0.44 | Other (Nucleoside) | a201a | Marinactinospora thermotolerans

Similar known gene clusters
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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