GCF_005221285.1_ASM522128v1_genomic - 7 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP039886.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	arylpolyene	605,471	644,783	APE Vf	Other	25%
Region 2	terpene	658,929	676,508
Region 3	hserlactone	979,203	999,958
Region 4	arylpolyene	1,095,656	1,136,038
Region 5	terpene	1,285,220	1,306,068
Region 6	arylpolyene,resorcinol	1,568,750	1,631,130
Region 7	RiPP-like	1,655,865	1,666,707

NZ_CP039886.1 - Region 1 - arylpolyene

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Location: 605,471 - 644,783 nt. (total: 39,313 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001808.1	0.21	Other	toyocamycin	Streptomyces diastatochromogenes
BGC0000881.1	0.21	Other	toyocamycin	Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000231.1	0.21	Polyketide	griseusin	Streptomyces griseus
BGC0000234.1	0.20	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000261.1	0.19	Polyketide	R1128	Streptomyces sp. R1128
BGC0001369.1	0.19	Polyketide	metatricycloene	uncultured bacterium
BGC0001302.1	0.18	Other	lomofungin	Streptomyces lomondensis
BGC0000204.1	0.18	Polyketide	benastatin A, benastatin B, BE-43767, TAN1532B	Streptomyces sp. A2991200
BGC0000840.1	0.18	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0000189.1	0.18	Polyketide	3-(2'-hydroxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-hydroxy-3'-oxo-4'-methylhexyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylhexyl)-indole	Xenorhabdus bovienii SS-2004

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001808.1	0.54	Other	toyocamycin	Streptomyces diastatochromogenes
BGC0000881.1	0.54	Other	toyocamycin	Streptomyces ahygroscopicus subsp. wuzhouensis
BGC0000231.1	0.53	Polyketide	griseusin	Streptomyces griseus
BGC0000234.1	0.53	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000261.1	0.52	Polyketide	R1128	Streptomyces sp. R1128
BGC0001369.1	0.51	Polyketide	metatricycloene	uncultured bacterium
BGC0001302.1	0.50	Other	lomofungin	Streptomyces lomondensis
BGC0000204.1	0.50	Polyketide	benastatin A, benastatin B, BE-43767, TAN1532B	Streptomyces sp. A2991200
BGC0000840.1	0.49	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0000189.1	0.49	Polyketide	3-(2'-hydroxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-hydroxy-3'-oxo-4'-methylhexyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylpentyl)-indole, 3-(2'-acetoxy-3'-oxo-4'-methylhexyl)-indole	Xenorhabdus bovienii SS-2004

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NZ_CP039886.1 - Region 2 - terpene

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Location: 658,929 - 676,508 nt. (total: 17,580 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.31	Terpene	carotenoid	Myxococcus xanthus
BGC0001456.1	0.22	Terpene	isorenieratene	Streptomyces argillaceus
BGC0001227.1	0.21	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000664.1	0.20	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1	0.20	Terpene	carotenoid	Streptomyces avermitilis
BGC0000783.1	0.19	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000886.1	0.18	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000649.1	0.18	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000774.1	0.18	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001238.1	0.17	Other	biotin	Aspergillus nidulans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.65	Terpene	carotenoid	Myxococcus xanthus
BGC0001456.1	0.55	Terpene	isorenieratene	Streptomyces argillaceus
BGC0001227.1	0.53	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000664.1	0.53	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1	0.53	Terpene	carotenoid	Streptomyces avermitilis
BGC0000783.1	0.50	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0000886.1	0.50	Other	allylmalonyl-CoA	Streptomyces tsukubensis
BGC0000649.1	0.50	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000774.1	0.49	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001238.1	0.48	Other	biotin	Aspergillus nidulans

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP039886.1 - Region 3 - hserlactone

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Location: 979,203 - 999,958 nt. (total: 20,756 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001682.1	0.33	Other	N-acyl lysine/ornithine	Pseudomonas aeruginosa LESB58
BGC0000770.1	0.18	Saccharide	lipo-oligosaccharide	Campylobacter jejuni
BGC0000780.1	0.18	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0001947.1	0.15	Saccharide	K53 capsular polysaccharide	Acinetobacter baumannii
BGC0000896.1	0.15	Other	cycloserine	Streptomyces lavendulae subsp. lavendulae
BGC0000760.1	0.14	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001654.1	0.14	Saccharide	lipooligosaccharide	Bacteroides thetaiotaomicron VPI-5482
BGC0000728.1	0.13	Saccharide	capsular polysaccharide	Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1	0.13	Saccharide	capsular polysaccharide	Klebsiella pneumoniae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001682.1	0.66	Other	N-acyl lysine/ornithine	Pseudomonas aeruginosa LESB58
BGC0000770.1	0.49	Saccharide	lipo-oligosaccharide	Campylobacter jejuni
BGC0000780.1	0.49	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0001947.1	0.45	Saccharide	K53 capsular polysaccharide	Acinetobacter baumannii
BGC0000896.1	0.45	Other	cycloserine	Streptomyces lavendulae subsp. lavendulae
BGC0000760.1	0.44	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001654.1	0.43	Saccharide	lipooligosaccharide	Bacteroides thetaiotaomicron VPI-5482
BGC0000728.1	0.42	Saccharide	capsular polysaccharide	Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1	0.42	Saccharide	capsular polysaccharide	Klebsiella pneumoniae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP039886.1 - Region 4 - arylpolyene

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Location: 1,095,656 - 1,136,038 nt. (total: 40,383 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001077.1	0.20	Terpene, Polyketide	alkyl-O-dihydrogeranyl-methoxyhydroquinones	Actinoplanes missouriensis 431
BGC0001595.1	0.19	Alkaloid	fischerindole	Fischerella sp. SAG 46.79
BGC0002008.1	0.18	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000836.1	0.18	Other	APE Ec	Escherichia coli CFT073
BGC0000723.1	0.17	Saccharide	β-D-galactosylvalidoxylamine-A	Streptomyces hygroscopicus subsp. limoneus
BGC0000709.1	0.16	Saccharide	neomycin	Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0000668.1	0.15	Terpene, Alkaloid	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830
BGC0001366.1	0.15	Polyketide	BE-24566B, zunyimycin A	Streptomyces sp. FJS31-2
BGC0001664.1	0.15	Terpene	merosterol	Scytonema sp. PCC 10023
BGC0000843.1	0.15	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001077.1	0.53	Terpene, Polyketide	alkyl-O-dihydrogeranyl-methoxyhydroquinones	Actinoplanes missouriensis 431
BGC0001595.1	0.51	Alkaloid	fischerindole	Fischerella sp. SAG 46.79
BGC0002008.1	0.50	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000836.1	0.50	Other	APE Ec	Escherichia coli CFT073
BGC0000723.1	0.48	Saccharide	β-D-galactosylvalidoxylamine-A	Streptomyces hygroscopicus subsp. limoneus
BGC0000709.1	0.46	Saccharide	neomycin	Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0000668.1	0.45	Terpene, Alkaloid	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830
BGC0001366.1	0.44	Polyketide	BE-24566B, zunyimycin A	Streptomyces sp. FJS31-2
BGC0001664.1	0.44	Terpene	merosterol	Scytonema sp. PCC 10023
BGC0000843.1	0.44	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP039886.1 - Region 5 - terpene

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Location: 1,285,220 - 1,306,068 nt. (total: 20,849 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.33	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000648.1	0.29	Terpene	carotenoid	Myxococcus xanthus
BGC0000634.1	0.21	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000630.1	0.21	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000643.1	0.20	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000640.1	0.20	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000656.1	0.19	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000646.1	0.18	Terpene	β-carotein	uncultured bacterium
BGC0000664.1	0.17	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1	0.17	Terpene	carotenoid	Streptomyces avermitilis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.66	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000648.1	0.62	Terpene	carotenoid	Myxococcus xanthus
BGC0000634.1	0.53	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000630.1	0.53	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000643.1	0.53	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000640.1	0.52	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000656.1	0.51	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000646.1	0.50	Terpene	β-carotein	uncultured bacterium
BGC0000664.1	0.48	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1	0.48	Terpene	carotenoid	Streptomyces avermitilis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP039886.1 - Region 6 - arylpolyene,resorcinol

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Location: 1,568,750 - 1,631,130 nt. (total: 62,381 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)
resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000387.1	0.35	NRP	mangotoxin	Pseudomonas syringae pv. syringae
BGC0001526.1	0.33	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001525.1	0.32	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000779.1	0.32	Saccharide	lipopolysaccharide	Aeromonas piscicola
BGC0001222.1	0.31	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.31	RiPP	gassericin A	Lactobacillus gasseri
BGC0000486.1	0.31	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.31	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000620.1	0.31	RiPP	lacticin Q	Lactococcus lactis
BGC0000522.1	0.31	RiPP	lacticin Z	Lactococcus lactis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000343.1	0.53	NRP	enterobactin	Pseudomonas sp. J465
BGC0000751.1	0.51	Saccharide	capsular polysaccharide	Actinobacillus pleuropneumoniae
BGC0001526.1	0.50	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000880.1	0.49	Other (Nucleoside)	tunicamycin B1	Streptomyces chartreusis NRRL 3882
BGC0001927.1	0.49	Other	A-94964	Streptomyces sp.
BGC0000387.1	0.49	NRP	mangotoxin	Pseudomonas syringae pv. syringae
BGC0001995.1	0.49	Terpene	heptelidic acid	Aspergillus oryzae RIB40
BGC0001525.1	0.48	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0001579.1	0.48	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000521.1	0.47	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP039886.1 - Region 7 - RiPP-like

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Location: 1,655,865 - 1,666,707 nt. (total: 10,843 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000607.1	0.06	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0001650.1	0.04	NRP	Le-pyrrolopyrazines	Lysobacter enzymogenes
BGC0001148.1	0.04	NRP, RiPP	pheganomycin	Streptomyces cirratus
BGC0001804.1	0.03	Polyketide	tiancimycin	Streptomyces sp. CB03234
BGC0001378.1	0.03	Polyketide	tiancimycin	Streptomyces sp. CB03234
BGC0000236.1	0.03	Polyketide	kinamycin	Streptomyces murayamaensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000607.1	0.24	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0001650.1	0.20	NRP	Le-pyrrolopyrazines	Lysobacter enzymogenes
BGC0001148.1	0.19	NRP, RiPP	pheganomycin	Streptomyces cirratus
BGC0001804.1	0.17	Polyketide	tiancimycin	Streptomyces sp. CB03234
BGC0001378.1	0.17	Polyketide	tiancimycin	Streptomyces sp. CB03234
BGC0000236.1	0.15	Polyketide	kinamycin	Streptomyces murayamaensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names