Select genomic region:
Overview
7.1
14.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LQQC01000007 (original name was: NZ_LQQC01000007.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | ectoine | 61,383 | 71,757 |

NZ_LQQC01000014 (original name was: NZ_LQQC01000014.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 14.1 | terpene | 1 | 15,824 | carotenoid | Terpene | 33%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | ectoine | 61,383 | 71,757 |
Region 14.1 | terpene | 1 | 15,824 | carotenoid | Terpene | 33%

No secondary metabolite regions were found in these records:
  NZ_LQQC01000001 (original name was: NZ_LQQC01000001.1)
  NZ_LQQC01000002 (original name was: NZ_LQQC01000002.1)
  NZ_LQQC01000003 (original name was: NZ_LQQC01000003.1)
  NZ_LQQC01000004 (original name was: NZ_LQQC01000004.1)
  NZ_LQQC01000005 (original name was: NZ_LQQC01000005.1)
  NZ_LQQC01000006 (original name was: NZ_LQQC01000006.1)
  NZ_LQQC01000008 (original name was: NZ_LQQC01000008.1)
  NZ_LQQC01000009 (original name was: NZ_LQQC01000009.1)
  NZ_LQQC01000010 (original name was: NZ_LQQC01000010.1)
  NZ_LQQC01000011 (original name was: NZ_LQQC01000011.1)
  NZ_LQQC01000012 (original name was: NZ_LQQC01000012.1)
  NZ_LQQC01000013 (original name was: NZ_LQQC01000013.1)

Compact view
c00007_NZ_LQQC.. - Region 1 - ectoine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 61,383 - 71,757 nt. (total: 10,375 nt) Show pHMM detection rules used
ectoine: ectoine_synt

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ectoine | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000855.1 |  | 0.18 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.18 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000857.1 |  | 0.15 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.15 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0001778.1 |  | 0.08 | Other | showdomycin | Streptomyces showdoensis
BGC0001591.1 |  | 0.03 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.03 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000855.1 |  | 0.49 | Other | ectoine | Methylomicrobium kenyense
BGC0000859.1 |  | 0.49 | Other | ectoine | Methylomicrobium alcaliphilum
BGC0000857.1 |  | 0.45 | Other | ectoine | Methylophaga alcalica
BGC0000854.1 |  | 0.45 | Other | ectoine | Methylomicrobium alcaliphilum 20Z
BGC0001778.1 |  | 0.31 | Other | showdomycin | Streptomyces showdoensis
BGC0001591.1 |  | 0.16 | Other | fatty acid enol ester | uncultured bacterium CSLC2
BGC0001688.1 |  | 0.16 | Other | N-tetradecanoyl tyrosine | uncultured bacterium CSLC2

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00014_NZ_LQQC.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 15,824 nt. (total: 15,824 nt) Show pHMM detection rules used
Region on contig edge.
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.33 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.25 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000644.1 |  | 0.23 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000650.1 |  | 0.22 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000664.1 |  | 0.20 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000640.1 |  | 0.19 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0001227.1 |  | 0.18 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0001456.1 |  | 0.16 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000649.1 |  | 0.15 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000636.1 |  | 0.14 | Terpene | carotenoid | Brevibacterium linens

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.66 | Terpene | carotenoid | Myxococcus xanthus
BGC0000637.1 |  | 0.59 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000644.1 |  | 0.56 | Terpene | carotenoid | Dietzia sp. CQ4
BGC0000650.1 |  | 0.55 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000664.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000640.1 |  | 0.51 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0001227.1 |  | 0.50 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0001456.1 |  | 0.46 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000649.1 |  | 0.45 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000636.1 |  | 0.44 | Terpene | carotenoid | Brevibacterium linens

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names