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Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP039266.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | RiPP-like | 1,811,069 | 1,821,293 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | RiPP-like | 1,811,069 | 1,821,293 |

No secondary metabolite regions were found in these records:
  NZ_CP039267.1

Compact view
NZ_CP039266.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 1,811,069 - 1,821,293 nt. (total: 10,225 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
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Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.20 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000619.1 |  | 0.12 | RiPP | gassericin T | Lactobacillus gasseri
BGC0001602.1 |  | 0.12 | RiPP | gassericin-T | Lactobacillus gasseri
BGC0001388.1 |  | 0.12 | RiPP | gassericin E | Lactobacillus gasseri
BGC0000624.1 |  | 0.10 | RiPP | salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide | Lactobacillus salivarius
BGC0000453.1 |  | 0.03 | NRP | valinomycin | Streptomyces tsusimaensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.52 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000619.1 |  | 0.40 | RiPP | gassericin T | Lactobacillus gasseri
BGC0001602.1 |  | 0.40 | RiPP | gassericin-T | Lactobacillus gasseri
BGC0001388.1 |  | 0.40 | RiPP | gassericin E | Lactobacillus gasseri
BGC0000624.1 |  | 0.35 | RiPP | salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide | Lactobacillus salivarius
BGC0000453.1 |  | 0.17 | NRP | valinomycin | Streptomyces tsusimaensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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