GCF_003340385.1_ASM334038v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_PPTS01000002 (original name was: NZ_PPTS01000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RRE-containing	151,718	171,987

NZ_PPTS01000004 (original name was: NZ_PPTS01000004.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	terpene	224,298	246,853

NZ_PPTS01000008 (original name was: NZ_PPTS01000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	RiPP-like	86,033	96,845

Region	Type	From	To	Similarity
Region 12.1	RRE-containing	151,718	171,987
Region 20.1	terpene	224,298	246,853
Region 24.1	RiPP-like	86,033	96,845

No secondary metabolite regions were found in these records:: NZ_PPTS01000001 (original name was: NZ_PPTS01000001.1); NZ_PPTS01000010 (original name was: NZ_PPTS01000010.1); NZ_PPTS01000011 (original name was: NZ_PPTS01000011.1); NZ_PPTS01000012 (original name was: NZ_PPTS01000012.1); NZ_PPTS01000013 (original name was: NZ_PPTS01000013.1); NZ_PPTS01000014 (original name was: NZ_PPTS01000014.1); NZ_PPTS01000015 (original name was: NZ_PPTS01000015.1); NZ_PPTS01000016 (original name was: NZ_PPTS01000016.1); NZ_PPTS01000017 (original name was: NZ_PPTS01000017.1); NZ_PPTS01000018 (original name was: NZ_PPTS01000018.1); NZ_PPTS01000019 (original name was: NZ_PPTS01000019.1); NZ_PPTS01000020 (original name was: NZ_PPTS01000020.1); NZ_PPTS01000021 (original name was: NZ_PPTS01000021.1); NZ_PPTS01000022 (original name was: NZ_PPTS01000022.1); NZ_PPTS01000023 (original name was: NZ_PPTS01000023.1); NZ_PPTS01000024 (original name was: NZ_PPTS01000024.1); NZ_PPTS01000025 (original name was: NZ_PPTS01000025.1); NZ_PPTS01000003 (original name was: NZ_PPTS01000003.1); NZ_PPTS01000005 (original name was: NZ_PPTS01000005.1); NZ_PPTS01000006 (original name was: NZ_PPTS01000006.1); NZ_PPTS01000007 (original name was: NZ_PPTS01000007.1); NZ_PPTS01000009 (original name was: NZ_PPTS01000009.1)

Compact view

c00012_NZ_PPTS.. - Region 1 - RRE-containing

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Location: 151,718 - 171,987 nt. (total: 20,270 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000774.1	0.18	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001550.1	0.16	RiPP	citrulassin D	Streptomyces katrae
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001176.1	0.15	RiPP	streptomonomicin	Streptomonospora alba
BGC0001552.1	0.15	RiPP	citrulassin F	Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000575.1	0.15	RiPP	lariatin	Rhodococcus jostii
BGC0001850.1	0.15	Other (Shikimate-derived)	diazaquinomycin A, diazaquinomycin E, diazaquinomycin F, diazaquinomycin G	Streptomyces sp. F001
BGC0001645.1	0.14	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0000623.1	0.14	RiPP	plantaricin W α, plantaricin W β	Lactobacillus plantarum
BGC0001965.1	0.14	Other	nybomycin	Streptomyces albus subsp. chlorinus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000774.1	0.50	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001550.1	0.46	RiPP	citrulassin D	Streptomyces katrae
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001176.1	0.46	RiPP	streptomonomicin	Streptomonospora alba
BGC0001552.1	0.46	RiPP	citrulassin F	Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000575.1	0.45	RiPP	lariatin	Rhodococcus jostii
BGC0001850.1	0.44	Other (Shikimate-derived)	diazaquinomycin A, diazaquinomycin E, diazaquinomycin F, diazaquinomycin G	Streptomyces sp. F001
BGC0001645.1	0.44	RiPP	lagmysin	Streptomyces sp. NRRL S-118
BGC0000623.1	0.43	RiPP	plantaricin W α, plantaricin W β	Lactobacillus plantarum
BGC0001965.1	0.43	Other	nybomycin	Streptomyces albus subsp. chlorinus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00020_NZ_PPTS.. - Region 1 - terpene

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Location: 224,298 - 246,853 nt. (total: 22,556 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.47	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000648.1	0.24	Terpene	carotenoid	Myxococcus xanthus
BGC0000656.1	0.23	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000664.1	0.22	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000640.1	0.21	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000633.1	0.21	Terpene	carotenoid	Streptomyces avermitilis
BGC0000630.1	0.21	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000646.1	0.20	Terpene	β-carotein	uncultured bacterium
BGC0000639.1	0.19	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000641.1	0.19	Terpene	carotenoid	Enterobacteriaceae bacterium DC416

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.77	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000648.1	0.57	Terpene	carotenoid	Myxococcus xanthus
BGC0000656.1	0.56	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000664.1	0.54	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000640.1	0.54	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000633.1	0.53	Terpene	carotenoid	Streptomyces avermitilis
BGC0000630.1	0.53	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000646.1	0.52	Terpene	β-carotein	uncultured bacterium
BGC0000639.1	0.51	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000641.1	0.51	Terpene	carotenoid	Enterobacteriaceae bacterium DC416

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00024_NZ_PPTS.. - Region 1 - RiPP-like

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Location: 86,033 - 96,845 nt. (total: 10,813 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000883.1	0.15	Other	arginomycin	Streptomyces arginensis
BGC0000550.1	0.14	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000043.1	0.12	Polyketide	curacin A	Moorea producens 19L
BGC0000527.1	0.11	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000547.1	0.11	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000506.1	0.10	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0001789.1	0.10	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.10	RiPP	nisin U	Streptococcus uberis
BGC0000535.1	0.10	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000556.1	0.10	RiPP	streptin	Streptococcus pyogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000883.1	0.45	Other	arginomycin	Streptomyces arginensis
BGC0000550.1	0.44	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000043.1	0.40	Polyketide	curacin A	Moorea producens 19L
BGC0000527.1	0.39	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000547.1	0.37	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000506.1	0.36	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0001789.1	0.36	RiPP	suicin 90-1330	Streptococcus suis
BGC0000537.1	0.36	RiPP	nisin U	Streptococcus uberis
BGC0000535.1	0.36	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000556.1	0.35	RiPP	streptin	Streptococcus pyogenes

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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