GCF_000185385.1_ASM18538v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_GL622296.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	156,663	176,806
Region 1.2	ranthipeptide	2,293,733	2,315,362

NZ_GL622299.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	1	2,065

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	156,663	176,806
Region 1.2	ranthipeptide	2,293,733	2,315,362
Region 4.1	RRE-containing	1	2,065

No secondary metabolite regions were found in these records:: NZ_GL622297.1; NZ_GL622298.1; NZ_GL622300.1; NZ_GL622301.1; NZ_GL622302.1; NZ_GL622303.1; NZ_GL622304.1; NZ_GL622305.1; NZ_GL622306.1; NZ_GL622307.1; NZ_GL622308.1; NZ_GL622309.1; NZ_GL622310.1; NZ_GL622311.1; NZ_GL622312.1; NZ_GL622313.1; NZ_GL622314.1; NZ_GL622315.1; NZ_GL622316.1; NZ_GL622317.1; NZ_GL622318.1

Compact view

NZ_GL622296.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 156,663 - 176,806 nt. (total: 20,144 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000528.1	0.17	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000616.1	0.17	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0000558.1	0.16	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001863.1	0.15	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000557.1	0.15	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000527.1	0.15	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000243.1	0.15	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000528.1	0.48	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000616.1	0.48	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001743.1	0.45	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0001863.1	0.45	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000557.1	0.45	RiPP	streptococcin A-FF22	Streptococcus pyogenes
BGC0000527.1	0.45	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000243.1	0.45	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_GL622296.1 - Region 2 - ranthipeptide

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Location: 2,293,733 - 2,315,362 nt. (total: 21,630 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001483.1	0.11	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0001814.1	0.03	NRP	ulleungmycin	Streptomyces sp. KCB13F003
BGC0000270.1	0.03	Polyketide	simocyclinone D8	Streptomyces antibioticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001483.1	0.39	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0001814.1	0.17	NRP	ulleungmycin	Streptomyces sp. KCB13F003
BGC0000270.1	0.16	Polyketide	simocyclinone D8	Streptomyces antibioticus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_GL622299.1 - Region 1 - RRE-containing

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Location: 1 - 2,065 nt. (total: 2,065 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	RRE-containing	Similarity score	Type	Compound(s)	Organism
BGC0001887.1		0.13	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000599.1		0.08	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001887.1		0.42	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000599.1		0.31	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names