GCF_000383955.1_ASM38395v1_genomic - 8 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_KB913013.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	microviridin	2,494,538	2,514,798
Region 1.2	T1PKS,NRPS-like,NRPS	2,784,099	2,835,494
Region 1.3	terpene	2,839,947	2,859,651	carotenoid	Terpene	42%
Region 1.4	T3PKS	3,122,315	3,163,523
Region 1.5	terpene	4,778,961	4,800,115
Region 1.6	lanthipeptide-class-i	6,020,519	6,051,527
Region 1.7	T1PKS,NRPS-like	6,265,577	6,312,281

NZ_KB913014.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	proteusin	101,708	122,868

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	microviridin	2,494,538	2,514,798
Region 1.2	T1PKS,NRPS-like,NRPS	2,784,099	2,835,494
Region 1.3	terpene	2,839,947	2,859,651	carotenoid	Terpene	42%
Region 1.4	T3PKS	3,122,315	3,163,523
Region 1.5	terpene	4,778,961	4,800,115
Region 1.6	lanthipeptide-class-i	6,020,519	6,051,527
Region 1.7	T1PKS,NRPS-like	6,265,577	6,312,281
Region 2.1	proteusin	101,708	122,868

No secondary metabolite regions were found in these records:: NZ_KB913015.1; NZ_KB913016.1

Compact view

NZ_KB913013.1 - Region 1 - microviridin

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Location: 2,494,538 - 2,514,798 nt. (total: 20,261 nt) Show pHMM detection rules used

microviridin: (mvd or mvnA)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000593.1	0.35	RiPP	microviridin J	Microcystis aeruginosa MRC
BGC0000592.1	0.28	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000554.1	0.21	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000516.1	0.21	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000591.1	0.19	RiPP	marinostatin	Alteromonas sp. B-10-31
BGC0000502.1	0.17	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000527.1	0.17	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000594.1	0.16	RiPP	microviridin K	Planktothrix agardhii NIVA-CYA 126/8
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000593.1	0.68	RiPP	microviridin J	Microcystis aeruginosa MRC
BGC0000592.1	0.62	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000554.1	0.54	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000516.1	0.53	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000591.1	0.52	RiPP	marinostatin	Alteromonas sp. B-10-31
BGC0000502.1	0.48	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000527.1	0.47	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000539.1	0.47	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000594.1	0.46	RiPP	microviridin K	Planktothrix agardhii NIVA-CYA 126/8
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_KB913013.1 - Region 2 - NRPS,NRPS-like,T1PKS

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Location: 2,784,099 - 2,835,494 nt. (total: 51,396 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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other genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000979.1	1.00	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	1.00	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000375.1	0.95	NRP	indigoidine	Streptomyces chromofuscus
BGC0000348.1	0.93	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001561.1	0.84	NRP	curacomycin	Streptomyces curacoi
BGC0001399.1	0.81	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000971.1	0.80	NRP, Polyketide	cinnabaramide A	Streptomyces cinnabarigriseus
BGC0000727.1	0.78	Saccharide	indigoidine	Streptomyces aureofaciens
BGC0000327.1	0.78	NRP	netropsin	Streptomyces ambofaciens ATCC 23877
BGC0001041.1	0.78	NRP, Polyketide	salinosporamide A	Salinispora tropica CNB-440

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000979.1	0.66	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.66	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000375.1	0.65	NRP	indigoidine	Streptomyces chromofuscus
BGC0000348.1	0.64	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001399.1	0.64	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000727.1	0.64	Saccharide	indigoidine	Streptomyces aureofaciens
BGC0000907.1	0.63	Other	lincomycin	Streptomyces lincolnensis
BGC0001561.1	0.63	NRP	curacomycin	Streptomyces curacoi
BGC0000327.1	0.62	NRP	netropsin	Streptomyces ambofaciens ATCC 23877
BGC0000720.1	0.62	Saccharide	tobramycin	Streptoalloteichus tenebrarius

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 2784098 - 2835494:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro - mal) + (NMe-X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 2784098 - 2829760:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro - mal) + (NMe-X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 2790286 - 2835494:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro - mal) + (NMe-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2318

Search NORINE for peptide: strict or relaxed

AMP-binding (23..418): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFmAqVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 80% (moderate)

PKS_AT (1143..1425): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 154.2
inactive: 102.4
Methoxymalonyl-CoA: 76.3
Methylmalonyl-CoA: 55.2
Propionyl-CoA: 44.4
Isobutyryl-CoA: 41.5
Ethylmalonyl-CoA: 21.5
CHC-CoA: 16.9
2-Methylbutyryl-CoA: 16.4
Benzoyl-CoA: 16.2
trans-1,2-CPDA: 15.0
Acetyl-CoA: 9.0
3-Methylbutyryl-CoA: 2.4
fatty_acid: 0.0

ctg1_2319

Search NORINE for peptide: strict or relaxed

AMP-binding (477..867): X

NRPSPredictor2: gly, ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiaqsAyVYK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 50% (weak)

NZ_KB913013.1 - Region 3 - terpene

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Location: 2,839,947 - 2,859,651 nt. (total: 19,705 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.33	Terpene	carotenoid	Myxococcus xanthus
BGC0000650.1	0.33	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000644.1	0.22	Terpene	carotenoid	Dietzia sp. CQ4
BGC0001456.1	0.21	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000637.1	0.20	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000633.1	0.20	Terpene	carotenoid	Streptomyces avermitilis
BGC0000636.1	0.19	Terpene	carotenoid	Brevibacterium linens
BGC0001412.1	0.19	Saccharide	polysaccharide C	Bacteroides fragilis
BGC0000774.1	0.19	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001973.1	0.19	Other	fervenulin	Streptomyces hiroshimensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.66	Terpene	carotenoid	Myxococcus xanthus
BGC0000650.1	0.66	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000644.1	0.55	Terpene	carotenoid	Dietzia sp. CQ4
BGC0001456.1	0.53	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000637.1	0.53	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000633.1	0.53	Terpene	carotenoid	Streptomyces avermitilis
BGC0000636.1	0.52	Terpene	carotenoid	Brevibacterium linens
BGC0001412.1	0.51	Saccharide	polysaccharide C	Bacteroides fragilis
BGC0000774.1	0.50	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0001973.1	0.50	Other	fervenulin	Streptomyces hiroshimensis

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_KB913013.1 - Region 4 - T3PKS

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Location: 3,122,315 - 3,163,523 nt. (total: 41,209 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001962.1	0.34	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001938.1	0.34	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001831.1	0.27	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001077.1	0.22	Terpene, Polyketide	alkyl-O-dihydrogeranyl-methoxyhydroquinones	Actinoplanes missouriensis 431
BGC0001241.1	0.17	Terpene	ergotamine	Claviceps fusiformis
BGC0001267.1	0.17	Terpene	lysergic acid, elymoclavine	Claviceps fusiformis
BGC0001964.1	0.16	Polyketide	alkylpyrone-407, alkylpyrone-393	Cystobacterineae bacterium
BGC0000348.1	0.15	NRP	ergovaline	Epichloe festucae var. lolii
BGC0000811.1	0.15	Alkaloid	fumigaclavine C	Aspergillus fumigatus Af293
BGC0000922.1	0.13	Other	pseudomonas quinolone signal (PQS)	Pseudomonas aeruginosa PAO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001962.1	0.68	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001938.1	0.67	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001831.1	0.61	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001077.1	0.55	Terpene, Polyketide	alkyl-O-dihydrogeranyl-methoxyhydroquinones	Actinoplanes missouriensis 431
BGC0001241.1	0.48	Terpene	ergotamine	Claviceps fusiformis
BGC0001267.1	0.48	Terpene	lysergic acid, elymoclavine	Claviceps fusiformis
BGC0001964.1	0.46	Polyketide	alkylpyrone-407, alkylpyrone-393	Cystobacterineae bacterium
BGC0000348.1	0.45	NRP	ergovaline	Epichloe festucae var. lolii
BGC0000811.1	0.44	Alkaloid	fumigaclavine C	Aspergillus fumigatus Af293
BGC0000922.1	0.42	Other	pseudomonas quinolone signal (PQS)	Pseudomonas aeruginosa PAO1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_KB913013.1 - Region 5 - terpene

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Location: 4,778,961 - 4,800,115 nt. (total: 21,155 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000487.1	0.17	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000634.1	0.17	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000487.1	0.48	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000634.1	0.48	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000496.1	0.46	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000519.1	0.46	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000504.1	0.46	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000521.1	0.46	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_KB913013.1 - Region 6 - lanthipeptide-class-i

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Location: 6,020,519 - 6,051,527 nt. (total: 31,009 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001392.1	0.28	RiPP	pinensins	Chitinophaga pinensis DSM 2588
BGC0000515.1	0.28	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000516.1	0.27	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000554.1	0.26	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000560.1	0.26	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.26	RiPP	pep5	Staphylococcus epidermidis
BGC0000536.1	0.24	RiPP	nisin Q	Lactococcus lactis
BGC0000502.1	0.24	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000535.1	0.24	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000527.1	0.24	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001392.1	0.62	RiPP	pinensins	Chitinophaga pinensis DSM 2588
BGC0000515.1	0.62	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000516.1	0.61	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000554.1	0.60	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000560.1	0.59	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.59	RiPP	pep5	Staphylococcus epidermidis
BGC0000536.1	0.57	RiPP	nisin Q	Lactococcus lactis
BGC0000502.1	0.57	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000535.1	0.57	RiPP	nisin A	Lactococcus lactis subsp. lactis
BGC0000527.1	0.57	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

Lanthipeptides

Core peptide predictions

No core peptides found.

NZ_KB913013.1 - Region 7 - NRPS-like,T1PKS

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Location: 6,265,577 - 6,312,281 nt. (total: 46,705 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000979.1	0.61	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.61	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000900.1	0.57	Other	ferrichrome	Aspergillus oryzae
BGC0001561.1	0.56	NRP	curacomycin	Streptomyces curacoi
BGC0001479.1	0.49	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000145.1	0.44	Polyketide	salinosporamide A	Salinispora tropica
BGC0001793.1	0.43	Polyketide	swainsonine	Chaetothyriaceae sp.
BGC0001794.1	0.43	Polyketide	swainsonine	Alternaria oxytropis
BGC0000044.1	0.43	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1
BGC0001041.1	0.41	NRP, Polyketide	salinosporamide A	Salinispora tropica CNB-440

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000979.1	0.64	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.64	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000900.1	0.62	Other	ferrichrome	Aspergillus oryzae
BGC0001561.1	0.61	NRP	curacomycin	Streptomyces curacoi
BGC0001479.1	0.58	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000145.1	0.55	Polyketide	salinosporamide A	Salinispora tropica
BGC0001793.1	0.54	Polyketide	swainsonine	Chaetothyriaceae sp.
BGC0001794.1	0.54	Polyketide	swainsonine	Alternaria oxytropis
BGC0000044.1	0.54	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1
BGC0001041.1	0.53	NRP, Polyketide	salinosporamide A	Salinispora tropica CNB-440

Similar known gene clusters

No matches found.

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 9, location 6265576 - 6312281:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr - mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_5087

Search NORINE for peptide: strict or relaxed

AMP-binding (21..429): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

PKS_AT (1157..1438): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 155.1
inactive: 102.0
Methoxymalonyl-CoA: 59.2
Methylmalonyl-CoA: 42.4
Isobutyryl-CoA: 39.4
Propionyl-CoA: 32.9
CHC-CoA: 17.8
Benzoyl-CoA: 17.6
2-Methylbutyryl-CoA: 11.6
Acetyl-CoA: 10.7
Ethylmalonyl-CoA: 10.2
trans-1,2-CPDA: 10.1
3-Methylbutyryl-CoA: 0.5
fatty_acid: 0.0

NZ_KB913014.1 - Region 1 - proteusin

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Location: 101,708 - 122,868 nt. (total: 21,161 nt) Show pHMM detection rules used

proteusin: (PoyD or TIGR03793)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000541.1	0.23	RiPP	paenicidin A	Paenibacillus polymyxa
BGC0000542.1	0.23	RiPP	paenicidin B	Paenibacillus terrae
BGC0001727.1	0.22	RiPP	paenilan	Paenibacillus polymyxa E681
BGC0000516.1	0.21	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000554.1	0.21	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000506.1	0.20	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000515.1	0.20	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0001392.1	0.20	RiPP	pinensins	Chitinophaga pinensis DSM 2588
BGC0000617.1	0.20	RiPP	coagulin	Bacillus coagulans
BGC0000540.1	0.20	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000541.1	0.56	RiPP	paenicidin A	Paenibacillus polymyxa
BGC0000542.1	0.56	RiPP	paenicidin B	Paenibacillus terrae
BGC0001727.1	0.55	RiPP	paenilan	Paenibacillus polymyxa E681
BGC0000516.1	0.54	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000554.1	0.53	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000506.1	0.53	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000515.1	0.53	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0001392.1	0.53	RiPP	pinensins	Chitinophaga pinensis DSM 2588
BGC0000617.1	0.52	RiPP	coagulin	Bacillus coagulans
BGC0000540.1	0.52	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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