GCF_026797385.1_ASM2679738v1_genomic - 32 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00004_NZ_JAMD.. (original name was: NZ_JAMDNA010000004.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS	182,533	230,095	chejuenolide A / chejuenolide B	Polyketide	7%

c00005_NZ_JAMD.. (original name was: NZ_JAMDNA010000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	T1PKS,NRPS	8,648	63,877
Region 5.2	NRPS	77,292	184,332	pellasoren	NRP + Polyketide:Modular type I	41%

c00007_NZ_JAMD.. (original name was: NZ_JAMDNA010000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	lanthipeptide-class-i	32,423	56,938	S-layer glycan	Saccharide	38%

c00008_NZ_JAMD.. (original name was: NZ_JAMDNA010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	cyclic-lactone-autoinducer	268,131	288,682	12-epi-hapalindole C isonitrile / 12-epi-hapalindole E / 12-epi-fischerindole U isonitrile / fischerindole L / 12-epi-fischerindole I isonitrile / welwitindolinone A isonitrile / welwitindolinone B isothiocyanate / welwitindolinone C isothiocyanate / N-methylwelwitindolinone C isothiocyanate / N-methylwelwitinsolinone C isonitrile / 3-epi-welwitindolinone B isothiocyanate / 3-(Z-2'-isocyanoethenyl)-indole	Terpene + Alkaloid	6%

c00010_NZ_JAMD.. (original name was: NZ_JAMDNA010000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS	111,400	158,143	fusaricidin B	Polyketide + NRP:Lipopeptide	25%

c00018_NZ_JAMD.. (original name was: NZ_JAMDNA010000018.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	ranthipeptide,resorcinol	1	46,873
Region 18.2	proteusin	131,883	152,125

c00019_NZ_JAMD.. (original name was: NZ_JAMDNA010000019.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	cyclic-lactone-autoinducer	1	20,268

c00027_NZ_JAMD.. (original name was: NZ_JAMDNA010000027.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS	129,247	164,377

c00028_NZ_JAMD.. (original name was: NZ_JAMDNA010000028.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	NRPS	40,712	122,195	octapeptin C4	NRP	35%

c00033_NZ_JAMD.. (original name was: NZ_JAMDNA010000033.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	cyclic-lactone-autoinducer	40,212	51,908

c00035_NZ_JAMD.. (original name was: NZ_JAMDNA010000035.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	T1PKS,NRPS	1	47,127
Region 35.2	NRPS-like	116,828	138,355	bogorol A	NRP	16%

c00039_NZ_JAMD.. (original name was: NZ_JAMDNA010000040.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	NRPS	1	37,113

c00041_NZ_JAMD.. (original name was: NZ_JAMDNA010000042.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	10,857	58,071	bacillibactin	NRP	53%

c00046_NZ_JAMD.. (original name was: NZ_JAMDNA010000047.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	NRPS	137,851	174,360

c00048_NZ_JAMD.. (original name was: NZ_JAMDNA010000049.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 48.1	NRPS	31,875	61,271	paenibacterin	NRP	60%

c00049_NZ_JAMD.. (original name was: NZ_JAMDNA010000050.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NRPS	1	6,300	brevicidine	NRP	18%

c00051_NZ_JAMD.. (original name was: NZ_JAMDNA010000052.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	NRPS	1	4,356	anabaenopeptin NZ857 / nostamide A	NRP	100%

c00054_NZ_JAMD.. (original name was: NZ_JAMDNA010000055.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 54.1	NRPS	1	19,640	paenibacterin	NRP	100%

c00060_NZ_JAMD.. (original name was: NZ_JAMDNA010000061.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	NRPS	1	48,945
Region 60.2	cyclic-lactone-autoinducer	69,882	90,412

c00062_NZ_JAMD.. (original name was: NZ_JAMDNA010000063.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	NRPS	1	17,117	anabaenopeptin NZ857 / nostamide A	NRP	100%

c00068_NZ_JAMD.. (original name was: NZ_JAMDNA010000070.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	NRPS-like	59,161	80,779	yersiniabactin	NRP + Polyketide	4%

c00077_NZ_JAMD.. (original name was: NZ_JAMDNA010000081.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 77.1	NRPS	1	7,325	pelgipeptin	NRP	37%

c00087_NZ_JAMD.. (original name was: NZ_JAMDNA010000091.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 87.1	cyclic-lactone-autoinducer	10,541	22,536

c00094_NZ_JAMD.. (original name was: NZ_JAMDNA010000100.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 94.1	NRPS	1	11,612	paenibacterin	NRP	60%

c00101_NZ_JAMD.. (original name was: NZ_JAMDNA010000107.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 101.1	transAT-PKS,NRPS	1	33,860

c00106_NZ_JAMD.. (original name was: NZ_JAMDNA010000113.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 106.1	NRPS	1	17,965

c00115_NZ_JAMD.. (original name was: NZ_JAMDNA010000125.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 115.1	NRPS	1	2,645

c00137_NZ_JAMD.. (original name was: NZ_JAMDNA010000154.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 137.1	NRPS	1	7,007

No secondary metabolite regions were found in these records:: c00001_NZ_JAMD.. (original name was: NZ_JAMDNA010000001.1); c00002_NZ_JAMD.. (original name was: NZ_JAMDNA010000002.1); c00003_NZ_JAMD.. (original name was: NZ_JAMDNA010000003.1); c00006_NZ_JAMD.. (original name was: NZ_JAMDNA010000006.1); c00009_NZ_JAMD.. (original name was: NZ_JAMDNA010000009.1); c00011_NZ_JAMD.. (original name was: NZ_JAMDNA010000011.1); c00012_NZ_JAMD.. (original name was: NZ_JAMDNA010000012.1); c00013_NZ_JAMD.. (original name was: NZ_JAMDNA010000013.1); c00014_NZ_JAMD.. (original name was: NZ_JAMDNA010000014.1); c00015_NZ_JAMD.. (original name was: NZ_JAMDNA010000015.1); c00016_NZ_JAMD.. (original name was: NZ_JAMDNA010000016.1); c00017_NZ_JAMD.. (original name was: NZ_JAMDNA010000017.1); c00020_NZ_JAMD.. (original name was: NZ_JAMDNA010000020.1); c00021_NZ_JAMD.. (original name was: NZ_JAMDNA010000021.1); c00022_NZ_JAMD.. (original name was: NZ_JAMDNA010000022.1); c00023_NZ_JAMD.. (original name was: NZ_JAMDNA010000023.1); c00024_NZ_JAMD.. (original name was: NZ_JAMDNA010000024.1); c00025_NZ_JAMD.. (original name was: NZ_JAMDNA010000025.1); c00026_NZ_JAMD.. (original name was: NZ_JAMDNA010000026.1); c00029_NZ_JAMD.. (original name was: NZ_JAMDNA010000029.1); c00030_NZ_JAMD.. (original name was: NZ_JAMDNA010000030.1); c00031_NZ_JAMD.. (original name was: NZ_JAMDNA010000031.1); c00032_NZ_JAMD.. (original name was: NZ_JAMDNA010000032.1); c00034_NZ_JAMD.. (original name was: NZ_JAMDNA010000034.1); c00036_NZ_JAMD.. (original name was: NZ_JAMDNA010000036.1); c00037_NZ_JAMD.. (original name was: NZ_JAMDNA010000038.1); c00038_NZ_JAMD.. (original name was: NZ_JAMDNA010000039.1); c00040_NZ_JAMD.. (original name was: NZ_JAMDNA010000041.1); c00042_NZ_JAMD.. (original name was: NZ_JAMDNA010000043.1); c00043_NZ_JAMD.. (original name was: NZ_JAMDNA010000044.1); c00044_NZ_JAMD.. (original name was: NZ_JAMDNA010000045.1); c00045_NZ_JAMD.. (original name was: NZ_JAMDNA010000046.1); c00047_NZ_JAMD.. (original name was: NZ_JAMDNA010000048.1); c00050_NZ_JAMD.. (original name was: NZ_JAMDNA010000051.1); c00052_NZ_JAMD.. (original name was: NZ_JAMDNA010000053.1); c00053_NZ_JAMD.. (original name was: NZ_JAMDNA010000054.1); c00055_NZ_JAMD.. (original name was: NZ_JAMDNA010000056.1); c00056_NZ_JAMD.. (original name was: NZ_JAMDNA010000057.1); c00057_NZ_JAMD.. (original name was: NZ_JAMDNA010000058.1); c00058_NZ_JAMD.. (original name was: NZ_JAMDNA010000059.1); c00059_NZ_JAMD.. (original name was: NZ_JAMDNA010000060.1); c00061_NZ_JAMD.. (original name was: NZ_JAMDNA010000062.1); c00063_NZ_JAMD.. (original name was: NZ_JAMDNA010000064.1); c00064_NZ_JAMD.. (original name was: NZ_JAMDNA010000065.1); c00065_NZ_JAMD.. (original name was: NZ_JAMDNA010000066.1); c00066_NZ_JAMD.. (original name was: NZ_JAMDNA010000067.1); c00067_NZ_JAMD.. (original name was: NZ_JAMDNA010000069.1); c00069_NZ_JAMD.. (original name was: NZ_JAMDNA010000072.1); c00070_NZ_JAMD.. (original name was: NZ_JAMDNA010000073.1); c00071_NZ_JAMD.. (original name was: NZ_JAMDNA010000074.1); c00072_NZ_JAMD.. (original name was: NZ_JAMDNA010000075.1); c00073_NZ_JAMD.. (original name was: NZ_JAMDNA010000077.1); c00074_NZ_JAMD.. (original name was: NZ_JAMDNA010000078.1); c00075_NZ_JAMD.. (original name was: NZ_JAMDNA010000079.1); c00076_NZ_JAMD.. (original name was: NZ_JAMDNA010000080.1); c00078_NZ_JAMD.. (original name was: NZ_JAMDNA010000082.1); c00079_NZ_JAMD.. (original name was: NZ_JAMDNA010000083.1); c00080_NZ_JAMD.. (original name was: NZ_JAMDNA010000084.1); c00081_NZ_JAMD.. (original name was: NZ_JAMDNA010000085.1); c00082_NZ_JAMD.. (original name was: NZ_JAMDNA010000086.1); c00083_NZ_JAMD.. (original name was: NZ_JAMDNA010000087.1); c00084_NZ_JAMD.. (original name was: NZ_JAMDNA010000088.1); c00085_NZ_JAMD.. (original name was: NZ_JAMDNA010000089.1); c00086_NZ_JAMD.. (original name was: NZ_JAMDNA010000090.1); c00088_NZ_JAMD.. (original name was: NZ_JAMDNA010000093.1); c00089_NZ_JAMD.. (original name was: NZ_JAMDNA010000094.1); c00090_NZ_JAMD.. (original name was: NZ_JAMDNA010000096.1); c00091_NZ_JAMD.. (original name was: NZ_JAMDNA010000097.1); c00092_NZ_JAMD.. (original name was: NZ_JAMDNA010000098.1); c00093_NZ_JAMD.. (original name was: NZ_JAMDNA010000099.1); c00095_NZ_JAMD.. (original name was: NZ_JAMDNA010000101.1); c00096_NZ_JAMD.. (original name was: NZ_JAMDNA010000102.1); c00097_NZ_JAMD.. (original name was: NZ_JAMDNA010000103.1); c00098_NZ_JAMD.. (original name was: NZ_JAMDNA010000104.1); c00099_NZ_JAMD.. (original name was: NZ_JAMDNA010000105.1); c00100_NZ_JAMD.. (original name was: NZ_JAMDNA010000106.1); c00102_NZ_JAMD.. (original name was: NZ_JAMDNA010000109.1); c00103_NZ_JAMD.. (original name was: NZ_JAMDNA010000110.1); c00104_NZ_JAMD.. (original name was: NZ_JAMDNA010000111.1); c00105_NZ_JAMD.. (original name was: NZ_JAMDNA010000112.1); c00107_NZ_JAMD.. (original name was: NZ_JAMDNA010000114.1); c00108_NZ_JAMD.. (original name was: NZ_JAMDNA010000115.1); c00109_NZ_JAMD.. (original name was: NZ_JAMDNA010000116.1); c00110_NZ_JAMD.. (original name was: NZ_JAMDNA010000117.1); c00111_NZ_JAMD.. (original name was: NZ_JAMDNA010000119.1); c00112_NZ_JAMD.. (original name was: NZ_JAMDNA010000120.1); c00113_NZ_JAMD.. (original name was: NZ_JAMDNA010000123.1); c00114_NZ_JAMD.. (original name was: NZ_JAMDNA010000124.1); c00116_NZ_JAMD.. (original name was: NZ_JAMDNA010000126.1); c00117_NZ_JAMD.. (original name was: NZ_JAMDNA010000127.1); c00118_NZ_JAMD.. (original name was: NZ_JAMDNA010000129.1); c00119_NZ_JAMD.. (original name was: NZ_JAMDNA010000130.1); c00120_NZ_JAMD.. (original name was: NZ_JAMDNA010000131.1); c00121_NZ_JAMD.. (original name was: NZ_JAMDNA010000134.1); c00122_NZ_JAMD.. (original name was: NZ_JAMDNA010000136.1); c00123_NZ_JAMD.. (original name was: NZ_JAMDNA010000137.1); c00124_NZ_JAMD.. (original name was: NZ_JAMDNA010000138.1); c00125_NZ_JAMD.. (original name was: NZ_JAMDNA010000139.1); c00126_NZ_JAMD.. (original name was: NZ_JAMDNA010000140.1); c00127_NZ_JAMD.. (original name was: NZ_JAMDNA010000141.1); c00128_NZ_JAMD.. (original name was: NZ_JAMDNA010000142.1); c00129_NZ_JAMD.. (original name was: NZ_JAMDNA010000143.1); c00130_NZ_JAMD.. (original name was: NZ_JAMDNA010000144.1); c00131_NZ_JAMD.. (original name was: NZ_JAMDNA010000145.1); c00132_NZ_JAMD.. (original name was: NZ_JAMDNA010000146.1); c00133_NZ_JAMD.. (original name was: NZ_JAMDNA010000147.1); c00134_NZ_JAMD.. (original name was: NZ_JAMDNA010000148.1); c00135_NZ_JAMD.. (original name was: NZ_JAMDNA010000152.1); c00136_NZ_JAMD.. (original name was: NZ_JAMDNA010000153.1); c00138_NZ_JAMD.. (original name was: NZ_JAMDNA010000155.1); c00139_NZ_JAMD.. (original name was: NZ_JAMDNA010000156.1); c00140_NZ_JAMD.. (original name was: NZ_JAMDNA010000159.1); c00141_NZ_JAMD.. (original name was: NZ_JAMDNA010000160.1); c00142_NZ_JAMD.. (original name was: NZ_JAMDNA010000162.1); c00143_NZ_JAMD.. (original name was: NZ_JAMDNA010000163.1); c00144_NZ_JAMD.. (original name was: NZ_JAMDNA010000164.1)

Compact view

c00004_NZ_JAMD.. - Region 1 - NRPS

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Location: 182,533 - 230,095 nt. (total: 47,563 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000457.1	0.31	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001399.1	0.31	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000342.1	0.27	NRP	enniatin	Fusarium equiseti
BGC0001637.1	0.26	NRP	kleboxymycin	Klebsiella oxytoca
BGC0001873.1	0.26	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0001833.1	0.25	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001345.1	0.25	NRP	myxochelin A, myxochelin B	Stigmatella aurantiaca Sg a15
BGC0001132.1	0.25	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.25	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.24	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000457.1	0.65	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001399.1	0.64	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000342.1	0.60	NRP	enniatin	Fusarium equiseti
BGC0001637.1	0.59	NRP	kleboxymycin	Klebsiella oxytoca
BGC0001873.1	0.59	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0001833.1	0.59	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001345.1	0.58	NRP	myxochelin A, myxochelin B	Stigmatella aurantiaca Sg a15
BGC0001132.1	0.58	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.58	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.58	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 182532 - 230095:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_178

Search NORINE for peptide: strict or relaxed

AMP-binding (486..883): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1539..1934): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAaFLaNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 80% (moderate)

c00005_NZ_JAMD.. - Region 1 - NRPS,T1PKS

Download region GenBank file

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Location: 8,648 - 63,877 nt. (total: 55,230 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.75	NRP	sevadicin	Paenibacillus larvae
BGC0000457.1	0.59	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001479.1	0.59	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000417.1	0.55	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0001671.1	0.55	NRP	monobactam	Agrobacterium tumefaciens
BGC0000342.1	0.55	NRP	enniatin	Fusarium equiseti
BGC0000313.1	0.54	NRP	beauvericin	Beauveria bassiana
BGC0001748.1	0.53	NRP, Polyketide	pseudospumigin A, pseudospumigin B, pseudospumigin C, pseudospumigin D, pseudospumigin E, pseudospumigin F	Nostoc sp. CENA543
BGC0000396.1	0.53	NRP	nodularin	Nostoc sp. 73.1
BGC0001873.1	0.52	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.70	NRP	sevadicin	Paenibacillus larvae
BGC0000457.1	0.64	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001479.1	0.63	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001671.1	0.62	NRP	monobactam	Agrobacterium tumefaciens
BGC0000417.1	0.61	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000342.1	0.61	NRP	enniatin	Fusarium equiseti
BGC0000313.1	0.60	NRP	beauvericin	Beauveria bassiana
BGC0001185.1	0.60	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0001748.1	0.60	NRP, Polyketide	pseudospumigin A, pseudospumigin B, pseudospumigin C, pseudospumigin D, pseudospumigin E, pseudospumigin F	Nostoc sp. CENA543
BGC0000396.1	0.60	NRP	nodularin	Nostoc sp. 73.1

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 8647 - 63877:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - thr) + (D-leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg5_31

Search NORINE for peptide: strict or relaxed

CAL_domain (35..481): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 256.4
NH2: 29.9
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

PKS_AT (1188..1472): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 75.0%; inactive: 75.0%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 145.2
inactive: 103.7
Methylmalonyl-CoA: 74.8
Methoxymalonyl-CoA: 67.1
Isobutyryl-CoA: 52.6
Propionyl-CoA: 39.9
Ethylmalonyl-CoA: 36.0
Acetyl-CoA: 33.5
2-Methylbutyryl-CoA: 31.0
CHC-CoA: 29.5
trans-1,2-CPDA: 27.6
Benzoyl-CoA: 25.5
3-Methylbutyryl-CoA: 18.9
fatty_acid: 0.0

AMP-binding (2655..3062): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg5_32

Search NORINE for peptide: strict or relaxed

AMP-binding (512..910): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGhVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

c00005_NZ_JAMD.. - Region 2 - NRPS

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Location: 77,292 - 184,332 nt. (total: 107,041 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000457.1	0.64	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001833.1	0.61	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000389.1	0.60	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001050.1	0.60	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0000426.1	0.59	NRP	sevadicin	Paenibacillus larvae
BGC0001135.1	0.59	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001075.1	0.58	Terpene, Polyketide	aurachin RE	Rhodococcus erythropolis
BGC0001585.1	0.57	Alkaloid	melinacidin IV	Escovopsis weberi
BGC0001844.1	0.57	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.56	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000389.1	0.67	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001050.1	0.67	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0000457.1	0.66	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001758.1	0.65	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001909.1	0.65	Polyketide	strobilurin	Strobilurus tenacellus
BGC0001844.1	0.65	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.65	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001220.1	0.65	NRP	aculeacin A	Aspergillus japonicus
BGC0001131.1	0.65	NRP	ambactin	Xenorhabdus miraniensis
BGC0001135.1	0.64	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis

Similar known gene clusters

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 77291 - 184332:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (dab - ile - gly) + (X) + (D-asn) + (lys) + (ccmal) + (X - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 77291 - 142010:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-asn) + (lys) + (ccmal) + (X - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 127307 - 184332:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (dab - ile - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg5_89

Search NORINE for peptide: strict or relaxed

AMP-binding (488..912): X

NRPSPredictor2: hydrophobic-aromatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVWeInAdDK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 70% (weak)

AMP-binding (1587..1990): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DspqVGHVdK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 60% (weak)

ctg5_94

PKS_AT (296..619): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 107.0
inactive: 65.4
Methoxymalonyl-CoA: 50.5
Methylmalonyl-CoA: 38.4
Ethylmalonyl-CoA: 22.1
Propionyl-CoA: 16.6
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg5_95

Search NORINE for peptide: strict or relaxed

AMP-binding (473..861): lys

NRPSPredictor2: lys

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DtESIGSVaK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)

ctg5_96

Search NORINE for peptide: strict or relaxed

CAL_domain (33..474): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 217.8
NH2: 36.9
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (1120..1515): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

ctg5_118

Search NORINE for peptide: strict or relaxed

AMP-binding (516..913): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmAffGAIaK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 60% (weak)

ctg5_120

Search NORINE for peptide: strict or relaxed

AMP-binding (467..875): dab

NRPSPredictor2: dab

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEISSIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 100% (strong)

AMP-binding (1517..1912): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DGFvLGiVFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 80% (moderate)

AMP-binding (2556..2955): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

c00007_NZ_JAMD.. - Region 1 - lanthipeptide-class-i

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Location: 32,423 - 56,938 nt. (total: 24,516 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

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Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000796.1	0.51	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000846.1	0.25	Other	tabtoxin	Pseudomonas syringae
BGC0000543.1	0.25	RiPP	pep5	Staphylococcus epidermidis
BGC0000507.1	0.24	RiPP	epicidin	Staphylococcus epidermidis
BGC0000540.1	0.23	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000560.1	0.23	RiPP	subtilomycin	Bacillus subtilis
BGC0000885.1	0.21	Other	4-hydroxy-3-nitrosobenzamide	Streptomyces murayamaensis
BGC0000533.1	0.21	RiPP	mutacin III	Streptococcus mutans
BGC0000530.1	0.21	RiPP	mutacin B-Ny266	Streptococcus mutans N66
BGC0000937.1	0.21	Other	fosfazinomycin A	Streptomyces sp. WM6372

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000796.1	0.79	Saccharide	S-layer glycan	Paenibacillus alvei
BGC0000846.1	0.59	Other	tabtoxin	Pseudomonas syringae
BGC0000543.1	0.58	RiPP	pep5	Staphylococcus epidermidis
BGC0000507.1	0.57	RiPP	epicidin	Staphylococcus epidermidis
BGC0000540.1	0.56	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000560.1	0.56	RiPP	subtilomycin	Bacillus subtilis
BGC0000885.1	0.54	Other	4-hydroxy-3-nitrosobenzamide	Streptomyces murayamaensis
BGC0000533.1	0.54	RiPP	mutacin III	Streptococcus mutans
BGC0000530.1	0.54	RiPP	mutacin B-Ny266	Streptococcus mutans N66
BGC0000937.1	0.53	Other	fosfazinomycin A	Streptomyces sp. WM6372

Similar known gene clusters

Lanthipeptide predictions

Lanthipeptide(s) for ctg7_32 - Putative Class I

ctg7_33 leader / core peptide: VDSANLIAASYEDAFDLDLQVNVLSDSESQ - MGCDhbNNVDhbCNVDhaACLNDhbYKDhaCDCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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Lanthipeptides

Core peptide predictions

ctg7_33 - Class I: Cleavage pHMM score: 4.70; RODEO score: 22; Monoisotopic mass: 2455.9 Da; Molecular weight: 2457.8 Da; Number of bridges: 5

c00008_NZ_JAMD.. - Region 1 - cyclic-lactone-autoinducer

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Location: 268,131 - 288,682 nt. (total: 20,552 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001935.1	0.16	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.16	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000810.1	0.16	Alkaloid	benzoxazinone DIMBOA	Zea mays
BGC0001783.1	0.15	Other	streptonigrin	Streptomyces flocculus
BGC0001896.1	0.15	Other	carbazomycin B	Streptomyces luteoverticillatus
BGC0001206.1	0.14	Other	indolmycin	Streptomyces griseus subsp. griseus
BGC0000466.1	0.14	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0000925.1	0.14	Other	quinolobactin	Pseudomonas fluorescens
BGC0001607.1	0.14	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0001540.1	0.14	Other	CC-1065	Streptomyces zelensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001935.1	0.47	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.47	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000810.1	0.46	Alkaloid	benzoxazinone DIMBOA	Zea mays
BGC0001783.1	0.45	Other	streptonigrin	Streptomyces flocculus
BGC0001896.1	0.44	Other	carbazomycin B	Streptomyces luteoverticillatus
BGC0001206.1	0.44	Other	indolmycin	Streptomyces griseus subsp. griseus
BGC0000466.1	0.44	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0000925.1	0.44	Other	quinolobactin	Pseudomonas fluorescens
BGC0001607.1	0.44	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0001540.1	0.43	Other	CC-1065	Streptomyces zelensis

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00010_NZ_JAMD.. - Region 1 - NRPS

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Location: 111,400 - 158,143 nt. (total: 46,744 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

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NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000348.1	0.31	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001897.1	0.30	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001479.1	0.28	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001637.1	0.26	NRP	kleboxymycin	Klebsiella oxytoca
BGC0001652.1	0.26	NRP	limazepine C, limazepine D, limazepine E, limazepine F, limazepine A	Streptomyces sp. ICBB 8177
BGC0001517.1	0.25	NRP	asperphenamate	Aspergillus terreus NIH2624
BGC0000446.1	0.25	NRP	tilivalline, 9-deoxy tilivalline, dihydroxy tilivalline, dehydro tilivalline, dihydroxy-dehydro tilivalline	Klebsiella oxytoca
BGC0001805.1	0.25	NRP	tilivalline	Klebsiella oxytoca
BGC0001132.1	0.25	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001345.1	0.25	NRP	myxochelin A, myxochelin B	Stigmatella aurantiaca Sg a15

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000348.1	0.64	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001897.1	0.63	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001479.1	0.62	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001637.1	0.60	NRP	kleboxymycin	Klebsiella oxytoca
BGC0001652.1	0.59	NRP	limazepine C, limazepine D, limazepine E, limazepine F, limazepine A	Streptomyces sp. ICBB 8177
BGC0001517.1	0.59	NRP	asperphenamate	Aspergillus terreus NIH2624
BGC0000446.1	0.59	NRP	tilivalline, 9-deoxy tilivalline, dihydroxy tilivalline, dehydro tilivalline, dihydroxy-dehydro tilivalline	Klebsiella oxytoca
BGC0001805.1	0.59	NRP	tilivalline	Klebsiella oxytoca
BGC0001132.1	0.59	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001345.1	0.58	NRP	myxochelin A, myxochelin B	Stigmatella aurantiaca Sg a15

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 111399 - 158143:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ile - val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg10_120

Search NORINE for peptide: strict or relaxed

AMP-binding (224..617): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGiTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 90% (moderate)

AMP-binding (1257..1650): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

c00018_NZ_JAMD.. - Region 1 - ranthipeptide,resorcinol

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Location: 1 - 46,873 nt. (total: 46,873 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))
resorcinol: DarB

Legend:

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Pfam domains

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000489.1	0.31	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000519.1	0.31	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000513.1	0.31	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001222.1	0.30	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000516.1	0.28	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000488.1	0.28	RiPP	circularin A	Clostridium beijerinckii
BGC0000601.1	0.28	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0001210.1	0.28	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001607.1	0.28	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0000759.1	0.27	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000888.1	0.53	Other	bacilysin	Bacillus sp. CS93
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000544.1	0.47	RiPP	planosporicin	Planomonospora alba
BGC0000516.1	0.47	RiPP	geobacillin II	Geobacillus thermodenitrificans
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000538.1	0.46	RiPP	nisin Z	Lactococcus lactis
BGC0001863.1	0.46	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000488.1	0.46	RiPP	circularin A	Clostridium beijerinckii
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001861.1	0.46	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00018_NZ_JAMD.. - Region 2 - proteusin

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Location: 131,883 - 152,125 nt. (total: 20,243 nt) Show pHMM detection rules used

proteusin: (PoyD or TIGR03793)

Legend:

core biosynthetic genes

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000498.1	0.16	RiPP	bovicin HJ50	Streptococcus equinus
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000554.1	0.15	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.15	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001551.1	0.15	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000500.1	0.15	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000551.1	0.47	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000294.1	0.47	NRP	acinetobactin	Acinetobacter baumannii
BGC0000519.1	0.47	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000498.1	0.46	RiPP	bovicin HJ50	Streptococcus equinus
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000487.1	0.46	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001551.1	0.45	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000500.1	0.45	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00019_NZ_JAMD.. - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 20,268 nt. (total: 20,268 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000622.1	0.17	RiPP	megacin	Bacillus megaterium
BGC0001782.1	0.07	Other	spiroindimicin A, spiroindimicin B, spiroindimicin C, spiroindimicin D, indimicin A, indimicin B, indimicin C, indimicin D, indimicin E, lynamicin A, lynamicin D, lynamicin F, lynamicin G	Streptomyces sp. SCSIO 03032
BGC0001469.1	0.07	NRP	marthiapeptide A	Brevibacillus sp. Leaf182
BGC0001067.1	0.07	Polyketide, Terpene	fumagillin, β-trans-bergamotene, fumagillol	Aspergillus fumigatus Af293
BGC0001964.1	0.05	Polyketide	alkylpyrone-407, alkylpyrone-393	Cystobacterineae bacterium
BGC0001902.1	0.05	NRP, Polyketide	bengamide	Myxococcus virescens
BGC0001060.1	0.05	Polyketide	dynemicin A	Micromonospora chersina
BGC0000344.1	0.05	NRP	entolysin	Pseudomonas entomophila L48
BGC0001048.1	0.03	NRP, Polyketide, Saccharide	tallysomycin A	Streptoalloteichus hindustanus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000622.1	0.48	RiPP	megacin	Bacillus megaterium
BGC0001782.1	0.29	Other	spiroindimicin A, spiroindimicin B, spiroindimicin C, spiroindimicin D, indimicin A, indimicin B, indimicin C, indimicin D, indimicin E, lynamicin A, lynamicin D, lynamicin F, lynamicin G	Streptomyces sp. SCSIO 03032
BGC0001469.1	0.28	NRP	marthiapeptide A	Brevibacillus sp. Leaf182
BGC0001067.1	0.27	Polyketide, Terpene	fumagillin, β-trans-bergamotene, fumagillol	Aspergillus fumigatus Af293
BGC0001964.1	0.23	Polyketide	alkylpyrone-407, alkylpyrone-393	Cystobacterineae bacterium
BGC0001902.1	0.23	NRP, Polyketide	bengamide	Myxococcus virescens
BGC0001060.1	0.22	Polyketide	dynemicin A	Micromonospora chersina
BGC0000344.1	0.21	NRP	entolysin	Pseudomonas entomophila L48
BGC0001048.1	0.16	NRP, Polyketide, Saccharide	tallysomycin A	Streptoalloteichus hindustanus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00027_NZ_JAMD.. - Region 1 - NRPS

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Location: 129,247 - 164,377 nt. (total: 35,131 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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NRPS/PKS domains

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NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001891.1	0.29	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001825.1	0.24	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.24	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833.1	0.23	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.23	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001135.1	0.22	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001479.1	0.22	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.22	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001824.1	0.21	NRP	xefoampeptides A-G	Xenorhabdus beddingii
BGC0001240.1	0.21	NRP	serinocyclin A, serinocyclin B	Metarhizium robertsii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001891.1	0.62	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001825.1	0.57	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.57	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833.1	0.56	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.56	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001135.1	0.55	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001479.1	0.55	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.55	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001824.1	0.54	NRP	xefoampeptides A-G	Xenorhabdus beddingii
BGC0001240.1	0.54	NRP	serinocyclin A, serinocyclin B	Metarhizium robertsii

Similar known gene clusters

No matches found.

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 129246 - 164377:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-X - val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_135

Search NORINE for peptide: strict or relaxed

AMP-binding (258..666): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAymvGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (1788..2194): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWLGmTFK
Nearest Stachelhaus code:: val, ile
Stachelhaus code match:: 90% (moderate)

c00028_NZ_JAMD.. - Region 1 - NRPS

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Location: 40,712 - 122,195 nt. (total: 81,484 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Pfam domains

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Detailed domain annotation

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Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000408.1	0.76	NRP	polymyxin	Paenibacillus polymyxa
BGC0001192.1	0.76	NRP	colistin A, colistin B	Paenibacillus alvei
BGC0001153.1	0.74	NRP	polymyxin B	Paenibacillus polymyxa
BGC0000426.1	0.45	NRP	sevadicin	Paenibacillus larvae
BGC0000389.1	0.44	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000457.1	0.33	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001758.1	0.32	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.32	NRP	ambactin	Xenorhabdus miraniensis
BGC0001767.1	0.32	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001844.1	0.32	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000408.1	0.91	NRP	polymyxin	Paenibacillus polymyxa
BGC0001192.1	0.91	NRP	colistin A, colistin B	Paenibacillus alvei
BGC0001153.1	0.91	NRP	polymyxin B	Paenibacillus polymyxa
BGC0000426.1	0.75	NRP	sevadicin	Paenibacillus larvae
BGC0000389.1	0.75	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000457.1	0.66	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001758.1	0.65	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.65	NRP	ambactin	Xenorhabdus miraniensis
BGC0001767.1	0.65	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001844.1	0.65	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 40711 - 122195:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-X - thr - dab - dab) + (thr) + (dab - thr - D-dab - dab - dab)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg28_54

Search NORINE for peptide: strict or relaxed

AMP-binding (497..909): dab

NRPSPredictor2: dab

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEISSIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 100% (strong)

AMP-binding (1551..1958): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (2616..3072): dab

NRPSPredictor2: dab

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEvSSIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 90% (moderate)

AMP-binding (4195..4634): dab

NRPSPredictor2: dab

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEISAIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 100% (strong)

AMP-binding (5277..5712): dab

NRPSPredictor2: dab

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEISAIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 100% (strong)

ctg28_57

Search NORINE for peptide: strict or relaxed

AMP-binding (269..676): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg28_58

Search NORINE for peptide: strict or relaxed

AMP-binding (293..683): X

NRPSPredictor2: phe, trp

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: phe, trp
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAWivGAIvK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

AMP-binding (1800..2207): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (2849..3288): dab

NRPSPredictor2: dab

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEISAIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 100% (strong)

AMP-binding (3933..4372): dab

NRPSPredictor2: dab

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEISAIDK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 100% (strong)

c00033_NZ_JAMD.. - Region 1 - cyclic-lactone-autoinducer

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Location: 40,212 - 51,908 nt. (total: 11,697 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

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Pfam domains

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Similar gene clusters

Analysis type:

Reference	cyclic-lactone-autoinducer	Similarity score	Type	Compound(s)	Organism
BGC0000779.1		0.17	Saccharide	lipopolysaccharide	Aeromonas piscicola
BGC0000703.1		0.14	Saccharide	kanamycin	Streptomyces kanamyceticus

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0000779.1		0.48	Saccharide	lipopolysaccharide	Aeromonas piscicola
BGC0000703.1		0.44	Saccharide	kanamycin	Streptomyces kanamyceticus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

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c00035_NZ_JAMD.. - Region 1 - NRPS,T1PKS

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Location: 1 - 47,127 nt. (total: 47,127 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.80	NRP	sevadicin	Paenibacillus larvae
BGC0000427.1	0.71	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001479.1	0.70	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000375.1	0.67	NRP	indigoidine	Streptomyces chromofuscus
BGC0000465.1	0.66	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001023.1	0.64	NRP, Polyketide	myxochromide S1	Stigmatella aurantiaca
BGC0000980.1	0.64	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000979.1	0.64	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000900.1	0.63	Other	ferrichrome	Aspergillus oryzae
BGC0000389.1	0.62	NRP	massetolide A	Pseudomonas fluorescens SS101

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.72	NRP	sevadicin	Paenibacillus larvae
BGC0000427.1	0.68	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001479.1	0.68	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000375.1	0.67	NRP	indigoidine	Streptomyces chromofuscus
BGC0000465.1	0.66	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001023.1	0.65	NRP, Polyketide	myxochromide S1	Stigmatella aurantiaca
BGC0000980.1	0.65	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000979.1	0.65	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0000389.1	0.65	NRP	massetolide A	Pseudomonas fluorescens SS101

Similar known gene clusters

No matches found.

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 47127:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal) + (D-val) + (phe)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg35_11

Search NORINE for peptide: strict or relaxed

AMP-binding (228..615): phe

NRPSPredictor2: phe

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: DAWtIAAVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 90% (moderate)

ctg35_12

Search NORINE for peptide: strict or relaxed

AMP-binding (713..1112): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWvGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

ctg35_13

PKS_AT (560..856): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; inactive: 62.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 97.5
inactive: 87.6
Methoxymalonyl-CoA: 44.7
Methylmalonyl-CoA: 33.9
Isobutyryl-CoA: 23.1
Propionyl-CoA: 16.0
Benzoyl-CoA: 15.2
2-Methylbutyryl-CoA: 12.5
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

c00035_NZ_JAMD.. - Region 2 - NRPS-like

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Location: 116,828 - 138,355 nt. (total: 21,528 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Detailed domain annotation

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Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.22	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001399.1	0.21	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001479.1	0.20	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001135.1	0.20	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001767.1	0.20	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001825.1	0.19	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.19	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.19	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.19	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001844.1	0.19	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.55	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001399.1	0.54	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001479.1	0.53	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001135.1	0.53	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001767.1	0.52	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001825.1	0.52	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.52	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.52	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.51	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001844.1	0.51	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

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c00039_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 37,113 nt. (total: 37,113 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000349.1	0.29	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0001479.1	0.28	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001796.1	0.28	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0001671.1	0.27	NRP	monobactam	Agrobacterium tumefaciens
BGC0001825.1	0.27	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001132.1	0.26	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000321.1	0.26	NRP	chaetocin	Collariella virescens
BGC0001833.1	0.26	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001758.1	0.26	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000342.1	0.26	NRP	enniatin	Fusarium equiseti

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000349.1	0.63	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0001479.1	0.62	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001796.1	0.61	NRP	tauramamide	Brevibacillus laterosporus DSM 25
BGC0001671.1	0.61	NRP	monobactam	Agrobacterium tumefaciens
BGC0001825.1	0.61	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001132.1	0.60	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000321.1	0.60	NRP	chaetocin	Collariella virescens
BGC0001833.1	0.59	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001758.1	0.59	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000342.1	0.59	NRP	enniatin	Fusarium equiseti

Similar known gene clusters

No matches found.

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 37113:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-orn - val - thr - D-orn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg39_1

Search NORINE for peptide: strict or relaxed

AMP-binding (444..843): orn

NRPSPredictor2: orn

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEVGSvDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 90% (moderate)

AMP-binding (1965..2365): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (3007..3406): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (4050..4450): orn

NRPSPredictor2: orn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEIGSVDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 100% (strong)

c00041_NZ_JAMD.. - Region 1 - NRPS

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Location: 10,857 - 58,071 nt. (total: 47,215 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000401.1	0.57	NRP	paenibactin	Paenibacillus elgii B69
BGC0001185.1	0.54	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0000309.1	0.33	NRP	bacillibactin	Bacillus subtilis subsp. subtilis str. 168
BGC0001615.1	0.33	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0000457.1	0.32	NRP	vicibactin	Rhizobium etli CFN 42
BGC0000368.1	0.28	NRP	streptobactin	Streptomyces sp. ATCC 700974
BGC0001833.1	0.28	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.28	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000417.1	0.28	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0001149.1	0.28	NRP, Saccharide	brabantamide A	Pseudomonas sp. SHC52

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000401.1	0.83	NRP	paenibactin	Paenibacillus elgii B69
BGC0001185.1	0.81	NRP	bacillibactin	Bacillus velezensis FZB42
BGC0000309.1	0.66	NRP	bacillibactin	Bacillus subtilis subsp. subtilis str. 168
BGC0001615.1	0.66	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0000457.1	0.65	NRP	vicibactin	Rhizobium etli CFN 42
BGC0000368.1	0.62	NRP	streptobactin	Streptomyces sp. ATCC 700974
BGC0001833.1	0.62	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.62	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000417.1	0.61	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0001149.1	0.61	NRP, Saccharide	brabantamide A	Pseudomonas sp. SHC52

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 10856 - 58071:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg41_36

Search NORINE for peptide: strict or relaxed

AMP-binding (464..866): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DImQiGqIyK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 60% (weak)

AMP-binding (1531..1949): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg41_38

Search NORINE for peptide: strict or relaxed

AMP-binding (31..437): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

c00046_NZ_JAMD.. - Region 1 - NRPS

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Location: 137,851 - 174,360 nt. (total: 36,510 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001135.1	0.30	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001844.1	0.30	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001825.1	0.30	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001131.1	0.29	NRP	ambactin	Xenorhabdus miraniensis
BGC0001833.1	0.29	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.28	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.28	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001758.1	0.28	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001261.1	0.27	NRP	AM-toxin	Alternaria alternata
BGC0001220.1	0.27	NRP	aculeacin A	Aspergillus japonicus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001135.1	0.64	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001844.1	0.64	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001825.1	0.64	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001131.1	0.63	NRP	ambactin	Xenorhabdus miraniensis
BGC0001833.1	0.63	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.62	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.62	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001758.1	0.62	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001261.1	0.60	NRP	AM-toxin	Alternaria alternata
BGC0001220.1	0.60	NRP	aculeacin A	Aspergillus japonicus

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 137850 - 174360:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (orn - tyr - val - pro - D-val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg46_171

Search NORINE for peptide: strict or relaxed

AMP-binding (478..882): orn

NRPSPredictor2: orn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEIGSIDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 100% (strong)

AMP-binding (1523..1921): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DsTqvAEVvK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 60% (weak)

AMP-binding (2564..2960): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFfIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (3601..4019): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQlIAHVaK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 80% (moderate)

AMP-binding (4661..5060): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

c00048_NZ_JAMD.. - Region 1 - NRPS

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Location: 31,875 - 61,271 nt. (total: 29,397 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001615.1	0.34	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001261.1	0.32	NRP	AM-toxin	Alternaria alternata
BGC0001132.1	0.31	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001561.1	0.29	NRP	curacomycin	Streptomyces curacoi
BGC0000417.1	0.29	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000457.1	0.29	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001128.1	0.29	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.29	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001479.1	0.28	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001825.1	0.28	NRP	xenematide	Xenorhabdus nematophila AN6/1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001615.1	0.67	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001261.1	0.65	NRP	AM-toxin	Alternaria alternata
BGC0001132.1	0.64	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001561.1	0.63	NRP	curacomycin	Streptomyces curacoi
BGC0000417.1	0.62	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000457.1	0.62	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001128.1	0.62	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.62	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001479.1	0.62	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001825.1	0.61	NRP	xenematide	Xenorhabdus nematophila AN6/1

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 31874 - 61271:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - val - asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg48_47

Search NORINE for peptide: strict or relaxed

AMP-binding (19..475): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQLGMvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 80% (moderate)

AMP-binding (1115..1509): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (2150..2544): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

c00049_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 6,300 nt. (total: 6,300 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.38	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000426.1	0.36	NRP	sevadicin	Paenibacillus larvae
BGC0000389.1	0.34	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000900.1	0.33	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.33	NRP	dimethylcoprogen	Alternaria alternata
BGC0000465.1	0.33	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001050.1	0.31	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0001479.1	0.29	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000979.1	0.29	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.29	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.70	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000426.1	0.68	NRP	sevadicin	Paenibacillus larvae
BGC0000389.1	0.67	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000900.1	0.67	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.66	NRP	dimethylcoprogen	Alternaria alternata
BGC0000465.1	0.66	NRP	xenortide A, xenortide B, xenortide C, xenortide D	Xenorhabdus nematophila ATCC 19061
BGC0001050.1	0.64	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0001479.1	0.63	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000979.1	0.63	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.63	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 6300:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly) + (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg49_2

Search NORINE for peptide: strict or relaxed

AMP-binding (19..470): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQLGMvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 80% (moderate)

AMP-binding (1110..1380): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DpEnIG---K
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 50% (weak)

c00051_NZ_JAMD.. - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 1 - 4,356 nt. (total: 4,356 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001479.1	0.24	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001825.1	0.22	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001641.1	0.21	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001758.1	0.21	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.21	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.21	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001220.1	0.20	NRP	aculeacin A	Aspergillus japonicus
BGC0001833.1	0.20	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001240.1	0.20	NRP	serinocyclin A, serinocyclin B	Metarhizium robertsii
BGC0000307.1	0.20	NRP	AbT1	Aureobasidium pullulans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001479.1	0.57	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001825.1	0.54	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001641.1	0.54	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001758.1	0.54	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.54	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135.1	0.54	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001220.1	0.53	NRP	aculeacin A	Aspergillus japonicus
BGC0001833.1	0.53	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001240.1	0.53	NRP	serinocyclin A, serinocyclin B	Metarhizium robertsii
BGC0000307.1	0.53	NRP	AbT1	Aureobasidium pullulans

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00054_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 19,640 nt. (total: 19,640 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

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NRPS/PKS domains

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NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001615.1	0.34	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001132.1	0.25	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.25	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001399.1	0.25	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001833.1	0.25	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.24	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.24	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.24	NRP	ambactin	Xenorhabdus miraniensis
BGC0001758.1	0.24	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000417.1	0.24	NRP	rhodochelin	Rhodococcus jostii RHA1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001615.1	0.67	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001132.1	0.59	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.58	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001399.1	0.58	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001833.1	0.58	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.58	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.58	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.58	NRP	ambactin	Xenorhabdus miraniensis
BGC0001758.1	0.57	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000417.1	0.57	NRP	rhodochelin	Rhodococcus jostii RHA1

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 19640:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg54_13

Search NORINE for peptide: strict or relaxed

AMP-binding (577..973): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DGFFLGVVFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

c00060_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 48,945 nt. (total: 48,945 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

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Pfam domains

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Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001535.1	0.36	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000389.1	0.33	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001502.1	0.30	NRP	amonabactin P 750	Aeromonas hydrophila subsp. hydrophila ATCC 7966
BGC0001479.1	0.30	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001671.1	0.28	NRP	monobactam	Agrobacterium tumefaciens
BGC0000298.1	0.27	NRP	aeruginosin 98-A, aeruginosin 98-B, aeruginosin 98-C	Microcystis aeruginosa NIES-98
BGC0000426.1	0.26	NRP	sevadicin	Paenibacillus larvae
BGC0000313.1	0.26	NRP	beauvericin	Beauveria bassiana
BGC0001152.1	0.26	NRP, Polyketide	fusaricidin B	Paenibacillus polymyxa
BGC0000342.1	0.26	NRP	enniatin	Fusarium equiseti

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001535.1	0.69	Other	branched-chain fatty acids	Streptomyces filamentosus
BGC0000389.1	0.66	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001502.1	0.64	NRP	amonabactin P 750	Aeromonas hydrophila subsp. hydrophila ATCC 7966
BGC0001479.1	0.63	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001671.1	0.62	NRP	monobactam	Agrobacterium tumefaciens
BGC0000298.1	0.61	NRP	aeruginosin 98-A, aeruginosin 98-B, aeruginosin 98-C	Microcystis aeruginosa NIES-98
BGC0000426.1	0.59	NRP	sevadicin	Paenibacillus larvae
BGC0000313.1	0.59	NRP	beauvericin	Beauveria bassiana
BGC0001152.1	0.59	NRP, Polyketide	fusaricidin B	Paenibacillus polymyxa
BGC0000342.1	0.59	NRP	enniatin	Fusarium equiseti

Similar known gene clusters

No matches found.

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 48945:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-leu - D-ala - D-leu) + (D-X - ile - D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg60_1

Search NORINE for peptide: strict or relaxed

AMP-binding (467..865): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALfMGAtiK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (1993..2389): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

AMP-binding (3049..3459): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVenIGaItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

ctg60_2

Search NORINE for peptide: strict or relaxed

AMP-binding (797..1189): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGhVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

AMP-binding (2317..2709): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

AMP-binding (3834..4233): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGhVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

c00060_NZ_JAMD.. - Region 2 - cyclic-lactone-autoinducer

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Location: 69,882 - 90,412 nt. (total: 20,531 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

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KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	cyclic-lactone-autoinducer	Similarity score	Type	Compound(s)	Organism
BGC0001704.1		0.04	Other	nocuolin A	Nodularia sp. HBU26
BGC0001703.1		0.03	Other	nocuolin A	Nostoc sp. CCAP 1453/38

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001704.1		0.18	Other	nocuolin A	Nodularia sp. HBU26
BGC0001703.1		0.17	Other	nocuolin A	Nostoc sp. CCAP 1453/38

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00062_NZ_JAMD.. - Region 1 - NRPS

Download region GenBank file

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Location: 1 - 17,117 nt. (total: 17,117 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.39	NRP	sevadicin	Paenibacillus larvae
BGC0000396.1	0.37	NRP	nodularin	Nostoc sp. 73.1
BGC0000389.1	0.34	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000351.1	0.33	NRP	exochelin	Mycolicibacterium smegmatis
BGC0001133.1	0.33	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001479.1	0.31	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001562.1	0.30	NRP	curacomycin	Streptomyces curacoi
BGC0001657.1	0.30	NRP	lysocin	Lysobacter sp. RH2180-5
BGC0001721.1	0.29	NRP	ornibactin	Burkholderia cepacia
BGC0000461.1	0.29	NRP	WAP-8294A2	Lysobacter enzymogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.71	NRP	sevadicin	Paenibacillus larvae
BGC0000396.1	0.70	NRP	nodularin	Nostoc sp. 73.1
BGC0000389.1	0.67	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0000351.1	0.67	NRP	exochelin	Mycolicibacterium smegmatis
BGC0001133.1	0.66	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001479.1	0.64	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001562.1	0.63	NRP	curacomycin	Streptomyces curacoi
BGC0001657.1	0.63	NRP	lysocin	Lysobacter sp. RH2180-5
BGC0001721.1	0.63	NRP	ornibactin	Burkholderia cepacia
BGC0000461.1	0.62	NRP	WAP-8294A2	Lysobacter enzymogenes

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 17117:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr) + (D-leu - D-ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg62_1

Search NORINE for peptide: strict or relaxed

AMP-binding (1206..1613): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg62_2

Search NORINE for peptide: strict or relaxed

AMP-binding (519..915): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGhVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

AMP-binding (2047..2447): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHMSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (3618..3862): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAEn-----K
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 40% (weak)

c00068_NZ_JAMD.. - Region 1 - NRPS-like

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Location: 59,161 - 80,779 nt. (total: 21,619 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.23	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001479.1	0.19	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.19	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.19	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001758.1	0.19	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001825.1	0.19	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000307.1	0.18	NRP	AbT1	Aureobasidium pullulans
BGC0001900.1	0.18	NRP	fragin	Burkholderia cenocepacia H111
BGC0001132.1	0.18	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001641.1	0.18	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.57	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001479.1	0.52	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.51	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.51	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001758.1	0.51	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001825.1	0.51	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000307.1	0.50	NRP	AbT1	Aureobasidium pullulans
BGC0001900.1	0.50	NRP	fragin	Burkholderia cenocepacia H111
BGC0001132.1	0.50	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001641.1	0.50	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00077_NZ_JAMD.. - Region 1 - NRPS

Download region GenBank file

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Location: 1 - 7,325 nt. (total: 7,325 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

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NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.35	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001249.1	0.31	NRP	dimethylcoprogen	Alternaria alternata
BGC0001479.1	0.28	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000979.1	0.27	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.27	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000449.1	0.25	NRP	tridecaptin	Paenibacillus terrae
BGC0001135.1	0.25	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001132.1	0.25	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001536.1	0.25	NRP	brevicidine	Brevibacillus laterosporus
BGC0001128.1	0.24	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.68	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001249.1	0.65	NRP	dimethylcoprogen	Alternaria alternata
BGC0001479.1	0.62	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000979.1	0.61	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.61	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000449.1	0.58	NRP	tridecaptin	Paenibacillus terrae
BGC0001135.1	0.58	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001132.1	0.58	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001536.1	0.58	NRP	brevicidine	Brevibacillus laterosporus
BGC0001128.1	0.57	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

Module view

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Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 7325:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg77_2

Search NORINE for peptide: strict or relaxed

AMP-binding (269..664): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DGFlLGmiYK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 70% (weak)

AMP-binding (1307..1705): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

c00087_NZ_JAMD.. - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

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Location: 10,541 - 22,536 nt. (total: 11,996 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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other genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00094_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 11,612 nt. (total: 11,612 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.39	NRP	sevadicin	Paenibacillus larvae
BGC0000351.1	0.37	NRP	exochelin	Mycolicibacterium smegmatis
BGC0001479.1	0.35	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000396.1	0.34	NRP	nodularin	Nostoc sp. 73.1
BGC0000389.1	0.33	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001133.1	0.32	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0000900.1	0.31	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.31	NRP	dimethylcoprogen	Alternaria alternata
BGC0001721.1	0.29	NRP	ornibactin	Burkholderia cepacia
BGC0000427.1	0.29	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000426.1	0.71	NRP	sevadicin	Paenibacillus larvae
BGC0000351.1	0.69	NRP	exochelin	Mycolicibacterium smegmatis
BGC0001479.1	0.68	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000396.1	0.67	NRP	nodularin	Nostoc sp. 73.1
BGC0000389.1	0.66	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001133.1	0.65	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0000900.1	0.64	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.64	NRP	dimethylcoprogen	Alternaria alternata
BGC0001721.1	0.63	NRP	ornibactin	Burkholderia cepacia
BGC0000427.1	0.62	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413

Similar known gene clusters

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 11612:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser) + (tyr - D-orn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg94_1

Search NORINE for peptide: strict or relaxed

AMP-binding (261..655): tyr

NRPSPredictor2: tyr

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGmITAEVvK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 80% (moderate)

AMP-binding (1298..1701): orn

NRPSPredictor2: orn

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGdVGSIDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 90% (moderate)

ctg94_2

Search NORINE for peptide: strict or relaxed

AMP-binding (8..226): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHxxa--K
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00101_NZ_JAMD.. - Region 1 - NRPS,transAT-PKS

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Location: 1 - 33,860 nt. (total: 33,860 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS: (cds(PKS_AT and not (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) and (cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) or cds(tra_KS and PP-binding)))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000041.1	0.57	Polyketide	oronofacic acid	Pseudomonas syringae
BGC0001479.1	0.55	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000417.1	0.54	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000426.1	0.52	NRP	sevadicin	Paenibacillus larvae
BGC0000342.1	0.51	NRP	enniatin	Fusarium equiseti
BGC0001748.1	0.50	NRP, Polyketide	pseudospumigin A, pseudospumigin B, pseudospumigin C, pseudospumigin D, pseudospumigin E, pseudospumigin F	Nostoc sp. CENA543
BGC0001050.1	0.49	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0000351.1	0.48	NRP	exochelin	Mycolicibacterium smegmatis
BGC0001833.1	0.47	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000349.1	0.47	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000041.1	0.62	Polyketide	oronofacic acid	Pseudomonas syringae
BGC0001479.1	0.61	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000417.1	0.61	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000426.1	0.60	NRP	sevadicin	Paenibacillus larvae
BGC0000342.1	0.59	NRP	enniatin	Fusarium equiseti
BGC0001748.1	0.59	NRP, Polyketide	pseudospumigin A, pseudospumigin B, pseudospumigin C, pseudospumigin D, pseudospumigin E, pseudospumigin F	Nostoc sp. CENA543
BGC0001050.1	0.58	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0000351.1	0.57	NRP	exochelin	Mycolicibacterium smegmatis
BGC0001833.1	0.57	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0000349.1	0.57	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 33860:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (ccmal) + (D-X - val - D-X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 33150:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (ccmal) + (D-X - val - D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg101_1

Search NORINE for peptide: strict or relaxed

AMP-binding (295..679): X

NRPSPredictor2: hydrophobic-aromatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgWAIAgVqK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (1783..2173): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (2816..3210): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgykVGLVDK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 70% (weak)

ctg101_5

PKS_AT (8..293): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 75.0%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 89.8
inactive: 29.8
Methoxymalonyl-CoA: 28.4
Methylmalonyl-CoA: 21.5
Propionyl-CoA: 14.3
Ethylmalonyl-CoA: 12.3
fatty_acid: 10.5
trans-1,2-CPDA: 0.0
Isobutyryl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg101_7

PKS_AT (7..123): pk

ATSignature: (unknown)

No matches above 50%

minowa: trans-1,2-CPDA

Prediction, score:

trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

c00106_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 17,965 nt. (total: 17,965 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000438.1	0.32	NRP	syringopeptin 25A	Pseudomonas syringae pv. syringae
BGC0001434.1	0.30	NRP	nematophin	Xenorhabdus budapestensis
BGC0001698.1	0.30	NRP	nevaltophin A, nevaltophin B, nevaltophin C, nevaltophin D	Xenorhabdus budapestensis
BGC0001479.1	0.29	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000400.1	0.28	NRP	paenibacterin	Paenibacillus sp. OSY-SE
BGC0000426.1	0.28	NRP	sevadicin	Paenibacillus larvae
BGC0000403.1	0.28	NRP	pelgipeptin	Paenibacillus elgii
BGC0000331.1	0.27	NRP	cyanopeptin	Planktothrix agardhii NIVA-CYA 116
BGC0001628.1	0.26	NRP	JBIR-78, JBIR-95	Kibdelosporangium sp. AK-AA56
BGC0000310.1	0.26	NRP	bacitracin	Bacillus licheniformis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000438.1	0.66	NRP	syringopeptin 25A	Pseudomonas syringae pv. syringae
BGC0001434.1	0.63	NRP	nematophin	Xenorhabdus budapestensis
BGC0001698.1	0.63	NRP	nevaltophin A, nevaltophin B, nevaltophin C, nevaltophin D	Xenorhabdus budapestensis
BGC0001479.1	0.63	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000400.1	0.62	NRP	paenibacterin	Paenibacillus sp. OSY-SE
BGC0000426.1	0.62	NRP	sevadicin	Paenibacillus larvae
BGC0000403.1	0.62	NRP	pelgipeptin	Paenibacillus elgii
BGC0000331.1	0.61	NRP	cyanopeptin	Planktothrix agardhii NIVA-CYA 116
BGC0001628.1	0.60	NRP	JBIR-78, JBIR-95	Kibdelosporangium sp. AK-AA56
BGC0000310.1	0.59	NRP	bacitracin	Bacillus licheniformis

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 17965:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-leu - D-val) + (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg106_1

Search NORINE for peptide: strict or relaxed

AMP-binding (467..873): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAEnIGtVsK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 70% (weak)

ctg106_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

AMP-binding (1997..2391): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWwGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

c00115_NZ_JAMD.. - Region 1 - NRPS

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Location: 1 - 2,645 nt. (total: 2,645 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001825.1	0.18	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000449.1	0.18	NRP	tridecaptin	Paenibacillus terrae
BGC0000397.1	0.18	NRP	nostocyclopeptide A2	Nostoc sp. ATCC 53789
BGC0001133.1	0.18	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001479.1	0.18	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001166.1	0.17	NRP	HC-toxin	Alternaria jesenskae
BGC0000461.1	0.17	NRP	WAP-8294A2	Lysobacter enzymogenes
BGC0000357.1	0.17	NRP	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0001641.1	0.17	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001128.1	0.17	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001825.1	0.50	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000449.1	0.50	NRP	tridecaptin	Paenibacillus terrae
BGC0000397.1	0.50	NRP	nostocyclopeptide A2	Nostoc sp. ATCC 53789
BGC0001133.1	0.49	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001479.1	0.49	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001166.1	0.49	NRP	HC-toxin	Alternaria jesenskae
BGC0000461.1	0.49	NRP	WAP-8294A2	Lysobacter enzymogenes
BGC0000357.1	0.48	NRP	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0001641.1	0.48	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001128.1	0.48	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00137_NZ_JAMD.. - Region 1 - NRPS

Download region GenBank file

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Location: 1 - 7,007 nt. (total: 7,007 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000342.1	0.26	NRP	enniatin	Fusarium equiseti
BGC0001132.1	0.24	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.24	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001135.1	0.24	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.24	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.24	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.24	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001758.1	0.23	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.22	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000307.1	0.22	NRP	AbT1	Aureobasidium pullulans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000342.1	0.59	NRP	enniatin	Fusarium equiseti
BGC0001132.1	0.58	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.57	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001135.1	0.57	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.57	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.57	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.57	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001758.1	0.56	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001641.1	0.55	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000307.1	0.55	NRP	AbT1	Aureobasidium pullulans

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 7007:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg137_1

Search NORINE for peptide: strict or relaxed

AMP-binding (1130..1527): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DGFFLGVVFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)