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Overview
1.1
4.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_KI535366.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 533,293 | 554,732 |

NZ_KI535369.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | terpene | 331,150 | 352,115 | equibactin | NRP | 14%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | ranthipeptide | 533,293 | 554,732 |
Region 4.1 | terpene | 331,150 | 352,115 | equibactin | NRP | 14%

No secondary metabolite regions were found in these records:
  NZ_KI535367.1
  NZ_KI535368.1
  NZ_KI535370.1
  NZ_KI535371.1
  NZ_KI535372.1
  NZ_KI535373.1

Compact view
NZ_KI535366.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 533,293 - 554,732 nt. (total: 21,440 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000760.1 |  | 0.19 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1 |  | 0.19 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000758.1 |  | 0.17 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000766.1 |  | 0.17 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000765.1 |  | 0.16 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000730.1 |  | 0.16 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000731.1 |  | 0.16 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000729.1 |  | 0.16 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0001894.1 |  | 0.16 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0000763.1 |  | 0.16 | Saccharide | stewartan | Pantoea stewartii subsp. stewartii DC283

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000760.1 |  | 0.51 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1 |  | 0.51 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000758.1 |  | 0.49 | Saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0000766.1 |  | 0.48 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000765.1 |  | 0.47 | Saccharide | exopolysaccharide | Lactobacillus johnsonii
BGC0000730.1 |  | 0.47 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000731.1 |  | 0.47 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000729.1 |  | 0.47 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0001894.1 |  | 0.47 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0000763.1 |  | 0.47 | Saccharide | stewartan | Pantoea stewartii subsp. stewartii DC283

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KI535369.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 331,150 - 352,115 nt. (total: 20,966 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.32 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.19 | Terpene | carotenoid | Myxococcus xanthus
BGC0000656.1 |  | 0.19 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000551.1 |  | 0.18 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000634.1 |  | 0.18 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.18 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000501.1 |  | 0.17 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000519.1 |  | 0.17 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0001551.1 |  | 0.16 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000513.1 |  | 0.16 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.66 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000648.1 |  | 0.51 | Terpene | carotenoid | Myxococcus xanthus
BGC0000656.1 |  | 0.51 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000551.1 |  | 0.50 | RiPP | SapB | Streptomyces coelicolor A3(2)
BGC0000634.1 |  | 0.49 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.49 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000501.1 |  | 0.49 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000519.1 |  | 0.48 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0001551.1 |  | 0.47 | RiPP | citrulassin E | Streptomyces glaucescens
BGC0000513.1 |  | 0.47 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names