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Overview
3.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_JH378831.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | ranthipeptide | 68,653 | 90,291 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | ranthipeptide | 68,653 | 90,291 |

No secondary metabolite regions were found in these records:
  NZ_JH378829.1
  NZ_JH378830.1
  NZ_JH378832.1
  NZ_JH378833.1
  NZ_JH378834.1
  NZ_JH378835.1
  NZ_JH378836.1
  NZ_JH378837.1
  NZ_JH378838.1
  NZ_JH378839.1
  NZ_JH378840.1
  NZ_JH378841.1
  NZ_JH378842.1
  NZ_JH378843.1
  NZ_JH378844.1
  NZ_JH378845.1
  NZ_JH378846.1
  NZ_JH378847.1
  NZ_JH378848.1
  NZ_JH378849.1
  NZ_JH378850.1
  NZ_JH378851.1
  NZ_JH378852.1
  NZ_JH378853.1
  NZ_JH378854.1
  NZ_JH378855.1
  NZ_JH378856.1
  NZ_JH378857.1
  NZ_JH378858.1
  NZ_JH378859.1
  NZ_JH378860.1
  NZ_JH378861.1

Compact view
NZ_JH378831.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
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Location: 68,653 - 90,291 nt. (total: 21,639 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
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Gene details
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KnownClusterBlast
Pfam domains
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Similar gene clusters
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Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.17 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000572.1 |  | 0.16 | RiPP | capistruin | Burkholderia thailandensis E444
BGC0001743.1 |  | 0.15 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000571.1 |  | 0.15 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001494.1 |  | 0.15 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306
BGC0001765.1 |  | 0.14 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0000294.1 |  | 0.14 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000590.1 |  | 0.14 | RiPP | microcin N | Escherichia coli
BGC0000916.1 |  | 0.14 | Other | molybdenum cofactor | Staphylococcus carnosus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001120.1 |  | 0.48 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000572.1 |  | 0.46 | RiPP | capistruin | Burkholderia thailandensis E444
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000571.1 |  | 0.45 | RiPP | burhizin | Paraburkholderia rhizoxinica HKI 454
BGC0001494.1 |  | 0.45 | RiPP | acinetodin | Acinetobacter gyllenbergii CIP 110306
BGC0001765.1 |  | 0.44 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0000294.1 |  | 0.44 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000590.1 |  | 0.43 | RiPP | microcin N | Escherichia coli
BGC0000916.1 |  | 0.43 | Other | molybdenum cofactor | Staphylococcus carnosus

Similar known gene clusters
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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