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Overview
1.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_AP024966.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | ranthipeptide | 1,109,080 | 1,130,732 |

NZ_AP024966.1 - Region 1 - ranthipeptide
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Location: 1,109,080 - 1,130,732 nt. (total: 21,653 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
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Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.17 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000778.1 |  | 0.13 | Saccharide | lipopolysaccharide | Aeromonas piscicola
BGC0000678.1 |  | 0.09 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001995.1 |  | 0.08 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0001483.1 |  | 0.08 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0000864.1 |  | 0.08 | Other | eicosapentaenoic acid-like compound | Moritella marina ATCC 15381
BGC0000653.1 |  | 0.05 | Terpene | pentalenolactone | Streptomyces arenae
BGC0000225.1 |  | 0.05 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0001555.1 |  | 0.05 | RiPP | colicin V | Escherichia coli chi7122
BGC0000406.1 |  | 0.05 | NRP | phosphinothricintripeptide | Streptomyces viridochromogenes

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000780.1 |  | 0.48 | Saccharide | O&K-antigen | Vibrio parahaemolyticus
BGC0000778.1 |  | 0.41 | Saccharide | lipopolysaccharide | Aeromonas piscicola
BGC0000678.1 |  | 0.32 | Terpene | pentalenolactone | Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0001995.1 |  | 0.32 | Terpene | heptelidic acid | Aspergillus oryzae RIB40
BGC0001483.1 |  | 0.32 | Other | 5-isoprenylindole-3-carboxylate β-D-glycosyl ester | Streptomyces sp. RM-5-8
BGC0000864.1 |  | 0.30 | Other | eicosapentaenoic acid-like compound | Moritella marina ATCC 15381
BGC0000653.1 |  | 0.24 | Terpene | pentalenolactone | Streptomyces arenae
BGC0000225.1 |  | 0.23 | Polyketide | frenolicin B | Streptomyces roseofulvus
BGC0001555.1 |  | 0.23 | RiPP | colicin V | Escherichia coli chi7122
BGC0000406.1 |  | 0.23 | NRP | phosphinothricintripeptide | Streptomyces viridochromogenes

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
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No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
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Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
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