Select genomic region:
Overview
1.1
4.1
9.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_FRYK01000002 (original name was: NZ_FRYK01000002.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 98,681 | 119,520 | carotenoid | Terpene | 28%

NZ_FRYK01000006 (original name was: NZ_FRYK01000006.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 4.1 | T3PKS | 1 | 30,452 |

NZ_FRYK01000001 (original name was: NZ_FRYK01000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | terpene | 703,874 | 725,013 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 98,681 | 119,520 | carotenoid | Terpene | 28%
Region 4.1 | T3PKS | 1 | 30,452 |
Region 9.1 | terpene | 703,874 | 725,013 |

No secondary metabolite regions were found in these records:
  NZ_FRYK01000012 (original name was: NZ_FRYK01000012.1)
  NZ_FRYK01000003 (original name was: NZ_FRYK01000003.1)
  NZ_FRYK01000007 (original name was: NZ_FRYK01000007.1)
  NZ_FRYK01000008 (original name was: NZ_FRYK01000008.1)
  NZ_FRYK01000004 (original name was: NZ_FRYK01000004.1)
  NZ_FRYK01000005 (original name was: NZ_FRYK01000005.1)
  NZ_FRYK01000009 (original name was: NZ_FRYK01000009.1)
  NZ_FRYK01000013 (original name was: NZ_FRYK01000013.1)
  NZ_FRYK01000011 (original name was: NZ_FRYK01000011.1)
  NZ_FRYK01000010 (original name was: NZ_FRYK01000010.1)

Compact view
c00001_NZ_FRYK.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 98,681 - 119,520 nt. (total: 20,840 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.28 | Terpene | carotenoid | Myxococcus xanthus
BGC0000650.1 |  | 0.27 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000630.1 |  | 0.20 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000640.1 |  | 0.20 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000703.1 |  | 0.20 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000637.1 |  | 0.18 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000656.1 |  | 0.18 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000664.1 |  | 0.18 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000646.1 |  | 0.17 | Terpene | β-carotein | uncultured bacterium
BGC0000638.1 |  | 0.16 | Terpene | carotenoid | Pantoea ananatis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000648.1 |  | 0.61 | Terpene | carotenoid | Myxococcus xanthus
BGC0000650.1 |  | 0.61 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000630.1 |  | 0.53 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000640.1 |  | 0.53 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000703.1 |  | 0.52 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000637.1 |  | 0.50 | Terpene | carotenoid | Corynebacterium glutamicum
BGC0000656.1 |  | 0.50 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000664.1 |  | 0.49 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000646.1 |  | 0.48 | Terpene | β-carotein | uncultured bacterium
BGC0000638.1 |  | 0.47 | Terpene | carotenoid | Pantoea ananatis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00004_NZ_FRYK.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 30,452 nt. (total: 30,452 nt) Show pHMM detection rules used
Region on contig edge.
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001938.1 |  | 0.35 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0000280.1 |  | 0.26 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0000282.1 |  | 0.24 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000281.1 |  | 0.24 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0001831.1 |  | 0.24 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001897.1 |  | 0.23 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001962.1 |  | 0.23 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001077.1 |  | 0.18 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0000928.1 |  | 0.16 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.16 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001938.1 |  | 0.68 | Polyketide | entotheonella | Candidatus Entotheonella serta
BGC0000280.1 |  | 0.60 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0000282.1 |  | 0.58 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000281.1 |  | 0.58 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0001831.1 |  | 0.57 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001897.1 |  | 0.56 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001962.1 |  | 0.56 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001077.1 |  | 0.50 | Terpene, Polyketide | alkyl-O-dihydrogeranyl-methoxyhydroquinones | Actinoplanes missouriensis 431
BGC0000928.1 |  | 0.47 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.47 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00009_NZ_FRYK.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 703,874 - 725,013 nt. (total: 21,140 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000633.1 |  | 0.17 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001456.1 |  | 0.17 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000664.1 |  | 0.17 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000913.1 |  | 0.15 | Other | MK-8 | Enterobacter cloacae
BGC0000243.1 |  | 0.14 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000905.1 |  | 0.13 | Other | heme D1 | Heliobacillus mobilis
BGC0000840.1 |  | 0.13 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0000906.1 |  | 0.13 | Other | heme D1 | Heliophilum fasciatum
BGC0000649.1 |  | 0.13 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001686.1 |  | 0.11 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000633.1 |  | 0.48 | Terpene | carotenoid | Streptomyces avermitilis
BGC0001456.1 |  | 0.47 | Terpene | isorenieratene | Streptomyces argillaceus
BGC0000664.1 |  | 0.47 | Terpene | isorenieratene | Streptomyces griseus subsp. griseus NBRC 13350
BGC0000913.1 |  | 0.45 | Other | MK-8 | Enterobacter cloacae
BGC0000243.1 |  | 0.43 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0000905.1 |  | 0.42 | Other | heme D1 | Heliobacillus mobilis
BGC0000840.1 |  | 0.42 | Other | xanthomonadin I | Xanthomonas oryzae pv. oryzae
BGC0000906.1 |  | 0.41 | Other | heme D1 | Heliophilum fasciatum
BGC0000649.1 |  | 0.41 | Terpene | carotenoid | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001686.1 |  | 0.38 | NRP | N-octanoyl-Met-Phe-H | Clostridium sp. CAG:567

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names