Select genomic region:
Overview
3.1
20.1
28.1
30.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_LDYG01000003 (original name was: NZ_LDYG01000003.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | terpene | 38,269 | 60,131 |

NZ_LDYG01000020 (original name was: NZ_LDYG01000020.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 20.1 | terpene | 46,377 | 67,213 | carotenoid | Terpene | 50%

NZ_LDYG01000028 (original name was: NZ_LDYG01000028.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 28.1 | T3PKS | 160,326 | 201,396 |

NZ_LDYG01000030 (original name was: NZ_LDYG01000030.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 30.1 | siderophore | 8,054 | 21,054 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | terpene | 38,269 | 60,131 |
Region 20.1 | terpene | 46,377 | 67,213 | carotenoid | Terpene | 50%
Region 28.1 | T3PKS | 160,326 | 201,396 |
Region 30.1 | siderophore | 8,054 | 21,054 |

No secondary metabolite regions were found in these records:
  NZ_LDYG01000001 (original name was: NZ_LDYG01000001.1)
  NZ_LDYG01000002 (original name was: NZ_LDYG01000002.1)
  NZ_LDYG01000004 (original name was: NZ_LDYG01000004.1)
  NZ_LDYG01000005 (original name was: NZ_LDYG01000005.1)
  NZ_LDYG01000006 (original name was: NZ_LDYG01000006.1)
  NZ_LDYG01000007 (original name was: NZ_LDYG01000007.1)
  NZ_LDYG01000008 (original name was: NZ_LDYG01000008.1)
  NZ_LDYG01000009 (original name was: NZ_LDYG01000009.1)
  NZ_LDYG01000010 (original name was: NZ_LDYG01000010.1)
  NZ_LDYG01000011 (original name was: NZ_LDYG01000011.1)
  NZ_LDYG01000012 (original name was: NZ_LDYG01000012.1)
  NZ_LDYG01000013 (original name was: NZ_LDYG01000013.1)
  NZ_LDYG01000014 (original name was: NZ_LDYG01000014.1)
  NZ_LDYG01000015 (original name was: NZ_LDYG01000015.1)
  NZ_LDYG01000016 (original name was: NZ_LDYG01000016.1)
  NZ_LDYG01000017 (original name was: NZ_LDYG01000017.1)
  NZ_LDYG01000018 (original name was: NZ_LDYG01000018.1)
  NZ_LDYG01000019 (original name was: NZ_LDYG01000019.1)
  NZ_LDYG01000021 (original name was: NZ_LDYG01000021.1)
  NZ_LDYG01000022 (original name was: NZ_LDYG01000022.1)
  NZ_LDYG01000023 (original name was: NZ_LDYG01000023.1)
  NZ_LDYG01000024 (original name was: NZ_LDYG01000024.1)
  NZ_LDYG01000025 (original name was: NZ_LDYG01000025.1)
  NZ_LDYG01000026 (original name was: NZ_LDYG01000026.1)
  NZ_LDYG01000027 (original name was: NZ_LDYG01000027.1)
  NZ_LDYG01000029 (original name was: NZ_LDYG01000029.1)
  NZ_LDYG01000031 (original name was: NZ_LDYG01000031.1)
  NZ_LDYG01000032 (original name was: NZ_LDYG01000032.1)
  NZ_LDYG01000033 (original name was: NZ_LDYG01000033.1)
  NZ_LDYG01000034 (original name was: NZ_LDYG01000034.1)
  NZ_LDYG01000035 (original name was: NZ_LDYG01000035.1)
  NZ_LDYG01000036 (original name was: NZ_LDYG01000036.1)
  NZ_LDYG01000037 (original name was: NZ_LDYG01000037.1)
  NZ_LDYG01000038 (original name was: NZ_LDYG01000038.1)
  NZ_LDYG01000039 (original name was: NZ_LDYG01000039.1)
  NZ_LDYG01000040 (original name was: NZ_LDYG01000040.1)
  NZ_LDYG01000041 (original name was: NZ_LDYG01000041.1)
  NZ_LDYG01000042 (original name was: NZ_LDYG01000042.1)
  NZ_LDYG01000043 (original name was: NZ_LDYG01000043.1)
  NZ_LDYG01000044 (original name was: NZ_LDYG01000044.1)
  NZ_LDYG01000045 (original name was: NZ_LDYG01000045.1)
  NZ_LDYG01000046 (original name was: NZ_LDYG01000046.1)
  NZ_LDYG01000047 (original name was: NZ_LDYG01000047.1)
  NZ_LDYG01000048 (original name was: NZ_LDYG01000048.1)
  NZ_LDYG01000049 (original name was: NZ_LDYG01000049.1)
  NZ_LDYG01000050 (original name was: NZ_LDYG01000050.1)
  NZ_LDYG01000051 (original name was: NZ_LDYG01000051.1)
  NZ_LDYG01000052 (original name was: NZ_LDYG01000052.1)
  NZ_LDYG01000053 (original name was: NZ_LDYG01000053.1)
  NZ_LDYG01000054 (original name was: NZ_LDYG01000054.1)
  NZ_LDYG01000055 (original name was: NZ_LDYG01000055.1)
  NZ_LDYG01000056 (original name was: NZ_LDYG01000056.1)
  NZ_LDYG01000057 (original name was: NZ_LDYG01000057.1)
  NZ_LDYG01000058 (original name was: NZ_LDYG01000058.1)
  NZ_LDYG01000059 (original name was: NZ_LDYG01000059.1)

Compact view
c00003_NZ_LDYG.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 38,269 - 60,131 nt. (total: 21,863 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000663.1 |  | 0.13 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0001733.1 |  | 0.13 | RiPP | PcpA | Pleurocapsa sp. PCC 7327
BGC0000670.1 |  | 0.13 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana
BGC0000914.1 |  | 0.08 | Other | methylenomycin A | Streptomyces coelicolor A3(2)
BGC0000367.1 |  | 0.07 | NRP | gramicidin | Brevibacillus brevis NBRC 100599
BGC0001005.1 |  | 0.06 | NRP, Polyketide | locillomycin | Bacillus subtilis
BGC0001946.1 |  | 0.06 | NRP, Polyketide | lagriamide | Burkholderia gladioli
BGC0001646.1 |  | 0.06 | Polyketide | lagriamide | Burkholderia gladioli
BGC0001207.1 |  | 0.06 | NRP | teixobactin | Eleftheria terrae
BGC0000329.1 |  | 0.05 | NRP | corpeptin A, corpeptin B | Pseudomonas corrugata

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000663.1 |  | 0.42 | Terpene | hopene | Streptomyces coelicolor A3(2)
BGC0001733.1 |  | 0.42 | RiPP | PcpA | Pleurocapsa sp. PCC 7327
BGC0000670.1 |  | 0.41 | Terpene | thalianol, thaliandiol | Arabidopsis thaliana
BGC0000914.1 |  | 0.32 | Other | methylenomycin A | Streptomyces coelicolor A3(2)
BGC0000367.1 |  | 0.27 | NRP | gramicidin | Brevibacillus brevis NBRC 100599
BGC0001005.1 |  | 0.26 | NRP, Polyketide | locillomycin | Bacillus subtilis
BGC0001946.1 |  | 0.25 | NRP, Polyketide | lagriamide | Burkholderia gladioli
BGC0001646.1 |  | 0.25 | Polyketide | lagriamide | Burkholderia gladioli
BGC0001207.1 |  | 0.24 | NRP | teixobactin | Eleftheria terrae
BGC0000329.1 |  | 0.23 | NRP | corpeptin A, corpeptin B | Pseudomonas corrugata

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00020_NZ_LDYG.. - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 46,377 - 67,213 nt. (total: 20,837 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.36 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000645.1 |  | 0.27 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000846.1 |  | 0.27 | Other | tabtoxin | Pseudomonas syringae
BGC0000885.1 |  | 0.24 | Other | 4-hydroxy-3-nitrosobenzamide | Streptomyces murayamaensis
BGC0000648.1 |  | 0.24 | Terpene | carotenoid | Myxococcus xanthus
BGC0000633.1 |  | 0.21 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000937.1 |  | 0.21 | Other | fosfazinomycin A | Streptomyces sp. WM6372
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000634.1 |  | 0.21 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.21 | Terpene | carotenoid | Brevundimonas vesicularis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000647.1 |  | 0.69 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000645.1 |  | 0.61 | Terpene | carotenoid | Halobacillus halophilus DSM 2266
BGC0000846.1 |  | 0.61 | Other | tabtoxin | Pseudomonas syringae
BGC0000885.1 |  | 0.57 | Other | 4-hydroxy-3-nitrosobenzamide | Streptomyces murayamaensis
BGC0000648.1 |  | 0.57 | Terpene | carotenoid | Myxococcus xanthus
BGC0000633.1 |  | 0.54 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000937.1 |  | 0.54 | Other | fosfazinomycin A | Streptomyces sp. WM6372
BGC0001227.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000634.1 |  | 0.53 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000643.1 |  | 0.53 | Terpene | carotenoid | Brevundimonas vesicularis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00028_NZ_LDYG.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 160,326 - 201,396 nt. (total: 41,071 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.25 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.23 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0000902.1 |  | 0.20 | Other | flaviolin | Saccharopolyspora erythraea NRRL 2338
BGC0000285.1 |  | 0.20 | Polyketide, Saccharide | flaviolin rhamnoside, 3,3'-diflaviolin, flaviolin | Saccharopolyspora erythraea
BGC0001310.1 |  | 0.20 | Terpene | naringenin | Streptomyces clavuligerus ATCC 27064
BGC0001831.1 |  | 0.17 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001525.1 |  | 0.16 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0001526.1 |  | 0.16 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000487.1 |  | 0.16 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000545.1 |  | 0.16 | RiPP | ruminococcin A | [Ruminococcus] gnavus E1

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.58 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.56 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0000902.1 |  | 0.53 | Other | flaviolin | Saccharopolyspora erythraea NRRL 2338
BGC0000285.1 |  | 0.53 | Polyketide, Saccharide | flaviolin rhamnoside, 3,3'-diflaviolin, flaviolin | Saccharopolyspora erythraea
BGC0001310.1 |  | 0.52 | Terpene | naringenin | Streptomyces clavuligerus ATCC 27064
BGC0001831.1 |  | 0.49 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0001525.1 |  | 0.47 | Other | bartoloside 2, bartoloside 3, bartoloside 4 | Synechocystis salina LEGE 06155
BGC0001526.1 |  | 0.47 | Other | bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K | Synechocystis salina LEGE 06099
BGC0000487.1 |  | 0.47 | RiPP | carnocyclin | Carnobacterium maltaromaticum
BGC0000545.1 |  | 0.46 | RiPP | ruminococcin A | [Ruminococcus] gnavus E1

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00030_NZ_LDYG.. - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 8,054 - 21,054 nt. (total: 13,001 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000942.1 |  | 0.49 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000791.1 |  | 0.25 | Saccharide | O-antigen | Cronobacter sakazakii
BGC0000730.1 |  | 0.25 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000731.1 |  | 0.25 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000733.1 |  | 0.25 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000732.1 |  | 0.25 | Saccharide | capsular polysaccharide | Raoultella planticola
BGC0000728.1 |  | 0.25 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1 |  | 0.25 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000788.1 |  | 0.25 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside
BGC0000805.1 |  | 0.13 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000942.1 |  | 0.78 | Other | petrobactin | Bacillus anthracis str. Ames
BGC0000791.1 |  | 0.59 | Saccharide | O-antigen | Cronobacter sakazakii
BGC0000730.1 |  | 0.59 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000731.1 |  | 0.59 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000733.1 |  | 0.58 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000732.1 |  | 0.58 | Saccharide | capsular polysaccharide | Raoultella planticola
BGC0000728.1 |  | 0.58 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae subsp. ozaenae
BGC0000729.1 |  | 0.58 | Saccharide | capsular polysaccharide | Klebsiella pneumoniae
BGC0000788.1 |  | 0.58 | Saccharide | O-antigen | Salmonella enterica subsp. salamae serovar Greenside
BGC0000805.1 |  | 0.42 | Saccharide | moenomycin | Streptomyces viridosporus ATCC 14672

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names