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Overview
1.1
1.2
2.1
2.2

### Identified secondary metabolite regions using strictness 'relaxed'

NC_011312.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | siderophore | 167,803 | 180,262 | putrebactin / avaroferrin | Other | 30%
Region 1.2 | arylpolyene | 2,219,408 | 2,263,046 | APE Vf | Other | 100%

NC_011313.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | siderophore | 297,559 | 311,737 | aerobactin | Other | 55%
Region 2.2 | hserlactone | 1,037,262 | 1,057,834 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | siderophore | 167,803 | 180,262 | putrebactin / avaroferrin | Other | 30%
Region 1.2 | arylpolyene | 2,219,408 | 2,263,046 | APE Vf | Other | 100%
Region 2.1 | siderophore | 297,559 | 311,737 | aerobactin | Other | 55%
Region 2.2 | hserlactone | 1,037,262 | 1,057,834 |

No secondary metabolite regions were found in these records:
  NC_011316.1
  NC_011315.1
  NC_011314.1
  NC_011311.1

Compact view
NC_011312.1 - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 167,803 - 180,262 nt. (total: 12,460 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001572.1 |  | 0.41 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001478.1 |  | 0.29 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.27 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.26 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.26 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001870.1 |  | 0.25 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000295.1 |  | 0.23 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001713.1 |  | 0.21 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001499.1 |  | 0.19 | Other | aerobactin | Pantoea ananatis
BGC0001498.1 |  | 0.19 | Other | aerobactin | Xenorhabdus szentirmaii DSM 16338

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001572.1 |  | 0.72 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001478.1 |  | 0.63 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0000941.1 |  | 0.61 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001453.1 |  | 0.60 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000940.1 |  | 0.60 | Other | desferrioxamin B, desferrioxamine E | Streptomyces coelicolor A3(2)
BGC0001870.1 |  | 0.58 | Other | putrebactin, avaroferrin | Xenorhabdus budapestensis
BGC0000295.1 |  | 0.56 | NRP | acinetoferrin | Acinetobacter haemolyticus
BGC0001713.1 |  | 0.54 | Other | ochrobactin | Ochrobactrum anthropi
BGC0001499.1 |  | 0.51 | Other | aerobactin | Pantoea ananatis
BGC0001498.1 |  | 0.51 | Other | aerobactin | Xenorhabdus szentirmaii DSM 16338

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_011312.1 - Region 2 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,219,408 - 2,263,046 nt. (total: 43,639 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000837.1 |  | 0.63 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0002008.1 |  | 0.30 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.27 | Other | APE Ec | Escherichia coli CFT073
BGC0000231.1 |  | 0.24 | Polyketide | griseusin | Streptomyces griseus
BGC0000228.1 |  | 0.22 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000272.1 |  | 0.21 | Polyketide | spore pigment | Streptomyces collinus
BGC0000889.1 |  | 0.21 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000248.1 |  | 0.21 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000261.1 |  | 0.21 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001895.1 |  | 0.20 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000837.1 |  | 0.86 | Other | APE Vf | Aliivibrio fischeri ES114
BGC0002008.1 |  | 0.64 | Other | aryl polyenes | Xenorhabdus doucetiae
BGC0000836.1 |  | 0.60 | Other | APE Ec | Escherichia coli CFT073
BGC0000231.1 |  | 0.57 | Polyketide | griseusin | Streptomyces griseus
BGC0000228.1 |  | 0.55 | Polyketide | granaticin | Streptomyces violaceoruber
BGC0000272.1 |  | 0.54 | Polyketide | spore pigment | Streptomyces collinus
BGC0000889.1 |  | 0.54 | Other | bagremycin A, bagremycin B | Streptomyces sp. WK-5344
BGC0000248.1 |  | 0.54 | Polyketide | naphtocyclinone | Streptomyces arenae
BGC0000261.1 |  | 0.53 | Polyketide | R1128 | Streptomyces sp. R1128
BGC0001895.1 |  | 0.53 | Polyketide | huanglongmycin A, huanglongmycin B, huanglongmycin C | Streptomyces sp. CB09001

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_011313.1 - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 297,559 - 311,737 nt. (total: 14,179 nt) Show pHMM detection rules used
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | siderophore | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001499.1 |  | 0.38 | Other | aerobactin | Pantoea ananatis
BGC0001478.1 |  | 0.28 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0001713.1 |  | 0.27 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000939.1 |  | 0.27 | Other | aerobactin | Grimontia hollisae
BGC0001498.1 |  | 0.27 | Other | aerobactin | Xenorhabdus szentirmaii DSM 16338
BGC0001572.1 |  | 0.26 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001453.1 |  | 0.21 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000941.1 |  | 0.21 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001531.1 |  | 0.21 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000942.1 |  | 0.21 | Other | petrobactin | Bacillus anthracis str. Ames

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001499.1 |  | 0.70 | Other | aerobactin | Pantoea ananatis
BGC0001478.1 |  | 0.61 | Other | desferrioxamine E | Streptomyces sp. ID38640
BGC0001713.1 |  | 0.61 | Other | ochrobactin | Ochrobactrum anthropi
BGC0000939.1 |  | 0.61 | Other | aerobactin | Grimontia hollisae
BGC0001498.1 |  | 0.60 | Other | aerobactin | Xenorhabdus szentirmaii DSM 16338
BGC0001572.1 |  | 0.59 | Other | desferrioxamine E | Pantoea agglomerans
BGC0001453.1 |  | 0.54 | Other | desferrioxamine | Streptomyces argillaceus
BGC0000941.1 |  | 0.54 | Other | desferrioxamin B | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001531.1 |  | 0.54 | Other | bisucaberin B | Tenacibaculum mesophilum
BGC0000942.1 |  | 0.54 | Other | petrobactin | Bacillus anthracis str. Ames

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_011313.1 - Region 2 - hserlactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,037,262 - 1,057,834 nt. (total: 20,573 nt) Show pHMM detection rules used
hserlactone: Autoind_synth

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | hserlactone | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000770.1 |  | 0.17 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0001897.1 |  | 0.17 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001894.1 |  | 0.15 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0001947.1 |  | 0.13 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0001510.1 |  | 0.10 | Other | anisomycin | Streptomyces hygrospinosus
BGC0001437.1 |  | 0.08 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001710.1 |  | 0.08 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001051.1 |  | 0.07 | NRP, Polyketide | thuggacin A | Sorangium cellulosum
BGC0000862.1 |  | 0.07 | Other | eicosapentaenoic acid | Shewanella pneumatophori
BGC0000344.1 |  | 0.07 | NRP | entolysin | Pseudomonas entomophila L48

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000770.1 |  | 0.48 | Saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0001897.1 |  | 0.48 | Polyketide | cepacin A | Burkholderia ambifaria IOP40-10
BGC0001894.1 |  | 0.45 | Saccharide | heteropolysaccharide (HePS) | Lactobacillus plantarum
BGC0001947.1 |  | 0.42 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0001510.1 |  | 0.35 | Other | anisomycin | Streptomyces hygrospinosus
BGC0001437.1 |  | 0.30 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001710.1 |  | 0.30 | NRP | obafluorin | Pseudomonas fluorescens
BGC0001051.1 |  | 0.29 | NRP, Polyketide | thuggacin A | Sorangium cellulosum
BGC0000862.1 |  | 0.28 | Other | eicosapentaenoic acid | Shewanella pneumatophori
BGC0000344.1 |  | 0.27 | NRP | entolysin | Pseudomonas entomophila L48

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names